JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GGPS1_chr1_235323570_235349532	0/0	t0009	1994	3	2	1	0	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0010	1993	3	3	0	0	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0011	1993	2	2	0	0	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0012	1993	2	2	0	0	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0013	1995	1	1	0	0	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0014	1994	1	0	0	0	0	1	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0015	1993	1	1	0	0	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0016	1993	1	0	0	1	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0017	1993	1	1	0	0	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0018	1993	1	0	0	1	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0019	1995	1	0	1	0	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGPS1_chr1_235323570_235349532	0/0	t0020	1996	1	0	1	0	0	0	copy fasta	GGPS1	chr1	235323570	235349532
GGT1_chr22_24598193_24633996	1/1	t0001	921	203	13	40	115	11	22	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0002	921	132	18	27	67	6	14	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0003	917	11	9	2	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0004	917	11	11	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0005	917	7	7	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0006	921	7	0	2	1	1	3	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0007	921	6	5	1	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0008	917	5	5	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0009	921	5	0	0	3	0	2	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0010	917	5	5	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0011	921	4	0	1	2	0	1	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0012	917	3	2	1	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0013	921	3	0	0	3	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0014	921	3	3	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0015	921	2	2	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0016	921	2	1	0	1	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0017	921	2	0	1	1	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0018	921	2	0	0	2	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0019	921	2	2	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0020	921	1	1	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0021	917	1	1	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0022	917	1	1	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0023	921	1	1	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0024	917	1	1	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0025	921	1	1	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0026	921	1	0	0	1	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0027	921	1	0	1	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0028	921	1	0	1	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0029	921	1	1	0	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT1_chr22_24598193_24633996	0/0	t0030	921	1	0	1	0	0	0	copy fasta	GGT1	chr22	24598193	24633996
GGT5_chr22_24214660_24250082	1/1	t0001	668	372	62	67	185	17	39	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	t0002	671	18	7	0	3	1	7	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	t0003	668	14	12	2	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	t0004	668	8	8	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	t0005	668	3	3	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	t0006	668	2	1	1	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	t0007	668	1	1	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT5_chr22_24214660_24250082	0/0	t0008	668	1	1	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082