JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GGT5_chr22_24214660_24250082	0/0	t0009	668	1	1	0	0	0	0	copy fasta	GGT5	chr22	24214660	24250082
GGT6_chr17_4551927_4565577	0/0	t0001	1148	150	9	21	108	5	7	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	1/1	t0002	1145	123	49	37	22	7	6	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0003	1146	54	1	9	32	1	11	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0004	1145	54	8	4	26	3	13	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0005	1146	16	11	4	0	0	1	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0006	1146	13	7	3	1	1	1	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0007	1149	9	1	0	8	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0008	1145	6	6	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0009	1145	6	0	0	3	0	3	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0010	1145	4	0	1	0	0	3	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0011	1147	4	0	0	4	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0012	1145	2	2	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0013	1144	2	1	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0014	1145	1	1	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0015	1144	1	0	0	0	0	1	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0016	1145	1	1	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0017	1144	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0018	1148	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0019	1148	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0020	1148	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0021	1148	1	0	1	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0022	1146	1	1	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0023	1145	1	1	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0024	1145	1	0	0	0	1	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0025	1145	1	0	1	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0026	1146	1	1	0	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0027	1144	1	0	0	1	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT6_chr17_4551927_4565577	0/0	t0028	1145	1	0	1	0	0	0	copy fasta	GGT6	chr17	4551927	4565577
GGT7_chr20_34839720_34877856	1/1	t0001	650	135	50	25	45	3	10	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0002	656	63	10	4	29	4	16	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0003	653	55	15	13	23	2	2	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0004	647	19	9	5	0	5	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0005	650	18	0	0	18	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0006	659	11	2	0	7	0	2	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0007	671	10	0	3	2	2	3	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0008	677	10	0	4	6	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0009	638	8	8	0	0	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0010	674	5	0	2	2	0	1	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0011	665	4	0	1	3	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0012	668	3	1	0	1	1	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0013	635	2	1	1	0	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0014	683	2	0	0	2	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0015	647	2	0	0	2	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0016	656	1	0	0	0	1	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0017	650	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0018	674	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0019	680	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0020	692	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	t0021	650	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856