JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GGT7_chr20_34839720_34877856	0/0	t0022	653	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGTA1_chr9_121450040_121504844	1/1	t0001	1002	298	62	53	150	10	21	copy fasta	GGTA1	chr9	121450040	121504844
GGTA1_chr9_121450040_121504844	0/0	t0002	1002	32	11	11	0	1	9	copy fasta	GGTA1	chr9	121450040	121504844
GGTA1_chr9_121450040_121504844	0/0	t0003	1002	2	1	1	0	0	0	copy fasta	GGTA1	chr9	121450040	121504844
GGTA1_chr9_121450040_121504844	0/0	t0004	1002	2	2	0	0	0	0	copy fasta	GGTA1	chr9	121450040	121504844
GGTA1_chr9_121450040_121504844	0/0	t0005	1002	1	0	1	0	0	0	copy fasta	GGTA1	chr9	121450040	121504844
GGTA1_chr9_121450040_121504844	0/0	t0006	1002	1	1	0	0	0	0	copy fasta	GGTA1	chr9	121450040	121504844
GGTA1_chr9_121450040_121504844	0/0	t0007	1002	1	0	0	0	1	0	copy fasta	GGTA1	chr9	121450040	121504844
GGTA1_chr9_121450040_121504844	0/0	t0008	1002	1	1	0	0	0	0	copy fasta	GGTA1	chr9	121450040	121504844
GGTLC1_chr20_23980053_23993779	0/0	t0001	369	379	82	79	177	8	33	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	t0002	369	27	7	0	13	1	6	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	1/1	t0003	369	15	6	1	0	3	3	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	t0004	369	3	1	0	0	2	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	t0005	369	3	0	0	3	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	t0006	369	2	2	0	0	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	t0007	369	2	0	0	2	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	t0008	369	2	2	0	0	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	t0009	369	1	0	0	0	0	1	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	t0010	369	1	0	0	1	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	t0011	369	1	0	0	0	0	1	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC2_chr22_22639614_22652898	0/1	t0001	287	192	27	59	92	5	8	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	1/0	t0002	287	94	25	13	26	5	24	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0003	287	41	1	3	22	2	13	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0004	287	23	20	3	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0005	288	23	1	1	18	0	3	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0006	287	11	2	0	6	2	1	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0007	287	10	10	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0008	287	5	2	1	2	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0009	287	2	1	0	1	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0010	288	2	0	0	1	0	1	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0011	287	2	2	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0012	287	1	0	0	1	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0013	287	1	1	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0014	287	1	0	0	1	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0015	287	1	0	0	1	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0016	287	1	1	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0017	287	1	1	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	t0018	287	1	0	0	1	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC3_chr22_18511344_18523161	0/0	t0001	291	29	6	7	15	0	1	copy fasta	GGTLC3	chr22	18511344	18523161
GGTLC3_chr22_18511344_18523161	0/0	t0002	291	2	1	1	0	0	0	copy fasta	GGTLC3	chr22	18511344	18523161
GGTLC3_chr22_18511344_18523161	0/0	t0003	291	1	0	0	0	0	1	copy fasta	GGTLC3	chr22	18511344	18523161
GGTLC3_chr22_18511344_18523161	0/0	t0004	291	1	1	0	0	0	0	copy fasta	GGTLC3	chr22	18511344	18523161
GGTLC3_chr22_18511344_18523161	0/0	t0005	291	1	0	0	1	0	0	copy fasta	GGTLC3	chr22	18511344	18523161
GH1_chr17_63912203_63923839	0/0	t0000	0	1	0	0	1	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	1/1	t0001	170	355	58	77	163	18	37	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	t0002	170	27	15	3	7	0	2	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	t0003	170	17	13	1	3	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	t0004	170	7	7	0	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	t0005	170	5	2	2	0	0	1	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	t0006	170	3	0	0	3	0	0	copy fasta	GH1	chr17	63912203	63923839