JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GH1_chr17_63912203_63923839	0/0	t0007	170	2	1	0	1	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	t0008	170	1	1	0	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	t0009	170	1	0	1	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	t0010	170	1	1	0	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH2_chr17_63875215_63886944	1/1	t0001	250	413	80	75	192	16	48	copy fasta	GH2	chr17	63875215	63886944
GH2_chr17_63875215_63886944	0/0	t0002	250	10	9	1	0	0	0	copy fasta	GH2	chr17	63875215	63886944
GH2_chr17_63875215_63886944	0/0	t0003	250	2	2	0	0	0	0	copy fasta	GH2	chr17	63875215	63886944
GH2_chr17_63875215_63886944	0/0	t0004	250	1	1	0	0	0	0	copy fasta	GH2	chr17	63875215	63886944
GHDC_chr17_42184087_42199494	1/1	t0001	816	321	52	55	156	15	41	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	t0002	816	38	28	3	6	0	1	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	t0003	816	5	5	0	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	t0004	816	3	0	2	0	1	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	t0005	816	3	3	0	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	t0006	816	2	2	0	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	t0007	816	1	0	0	0	0	1	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	t0008	816	1	0	0	0	0	1	copy fasta	GHDC	chr17	42184087	42199494
GHITM_chr10_84134509_84158568	1/1	t0001	1345	369	44	65	208	17	33	copy fasta	GHITM	chr10	84134509	84158568
GHITM_chr10_84134509_84158568	0/0	t0002	1345	42	37	5	0	0	0	copy fasta	GHITM	chr10	84134509	84158568
GHITM_chr10_84134509_84158568	0/0	t0003	1345	28	12	7	1	1	7	copy fasta	GHITM	chr10	84134509	84158568
GHITM_chr10_84134509_84158568	0/0	t0004	1345	4	0	4	0	0	0	copy fasta	GHITM	chr10	84134509	84158568
GHITM_chr10_84134509_84158568	0/0	t0005	1345	4	4	0	0	0	0	copy fasta	GHITM	chr10	84134509	84158568
GHITM_chr10_84134509_84158568	0/0	t0006	1345	1	0	0	1	0	0	copy fasta	GHITM	chr10	84134509	84158568
GHITM_chr10_84134509_84158568	0/0	t0007	1345	1	0	1	0	0	0	copy fasta	GHITM	chr10	84134509	84158568
GHITM_chr10_84134509_84158568	0/0	t0008	1345	1	1	0	0	0	0	copy fasta	GHITM	chr10	84134509	84158568
GHRHR_chr7_30958953_30984528	1/1	t0001	401	322	49	77	144	18	32	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	t0002	401	47	10	3	32	0	2	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	t0003	401	30	21	1	0	0	8	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	t0004	401	8	3	1	2	0	2	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	t0005	401	5	5	0	0	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	t0006	401	4	4	0	0	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	t0007	401	4	4	0	0	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRHR_chr7_30958953_30984528	0/0	t0008	401	2	2	0	0	0	0	copy fasta	GHRHR	chr7	30958953	30984528
GHRH_chr20_37246086_37266814	1/1	t0001	219	407	98	72	175	16	44	copy fasta	GHRH	chr20	37246086	37266814
GHRH_chr20_37246086_37266814	0/0	t0002	219	1	0	0	1	0	0	copy fasta	GHRH	chr20	37246086	37266814
GHRL_chr3_10280666_10297947	0/1	t0001	1081	240	50	58	92	5	34	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0002	1081	95	12	4	69	2	8	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	1/0	t0003	1081	69	28	9	22	6	3	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0004	1081	15	0	0	15	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0005	1081	10	6	4	0	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0006	1081	7	0	0	6	0	1	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0007	1081	7	0	0	6	0	1	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0008	1081	4	0	0	4	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0009	1081	3	2	0	1	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0010	1081	2	2	0	0	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0011	1081	2	0	2	0	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0012	1081	1	0	1	0	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0013	1081	1	0	0	0	0	1	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0014	1081	1	0	0	1	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0015	1081	1	0	0	1	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0016	1081	1	0	0	1	0	0	copy fasta	GHRL	chr3	10280666	10297947