JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GHRL_chr3_10280666_10297947	0/0	t0017	1081	1	0	0	0	1	0	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0018	1081	1	0	0	1	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHRL_chr3_10280666_10297947	0/0	t0019	1081	1	0	0	1	0	0	copy fasta	GHRL	chr3	10280666	10297947
GHR_chr5_42418439_42726878	0/0	t0001	2981	45	18	6	12	1	8	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/1	t0002	2983	34	18	6	0	3	6	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0003	2981	29	4	9	10	4	2	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0004	2984	14	12	2	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	1/0	t0005	2983	13	4	5	0	1	2	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0006	2981	12	4	7	0	1	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0007	2981	6	2	3	0	0	1	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0008	2981	5	0	3	0	1	1	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0009	2981	4	4	0	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0010	2981	4	4	0	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0011	3326	4	0	0	4	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0012	3327	4	0	0	4	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0013	2981	4	3	1	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0014	2981	3	3	0	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0015	2984	3	3	0	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0016	3296	3	0	0	3	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0017	3317	3	0	0	0	0	3	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0018	3319	3	0	1	0	0	2	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0019	2981	2	2	0	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0020	2981	2	1	1	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0021	2983	1	1	0	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0022	2981	1	0	0	0	1	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0023	2983	1	0	1	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0024	3317	1	0	0	0	0	1	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0025	3319	1	0	0	0	0	1	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0026	2981	1	0	0	1	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0027	2981	1	1	0	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0028	2980	1	0	1	0	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0029	3303	1	0	0	1	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0030	3306	1	0	0	1	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0031	3317	1	0	0	0	0	1	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0032	3331	1	0	0	1	0	0	copy fasta	GHR	chr5	42418439	42726878
GHR_chr5_42418439_42726878	0/0	t0033	3334	1	0	0	1	0	0	copy fasta	GHR	chr5	42418439	42726878
GHSR_chr3_172438291_172453456	0/0	t0001	1914	130	29	35	47	8	11	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	t0002	1914	125	10	20	77	2	16	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/1	t0003	1906	119	4	14	83	3	14	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	1/0	t0004	1914	36	21	8	0	1	5	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	t0005	1914	9	5	3	0	0	1	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	t0006	1914	7	7	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	t0007	1910	5	5	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	t0008	1914	5	5	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	t0009	1914	2	2	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	t0010	1914	2	0	1	0	0	1	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	t0011	1914	1	1	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	t0012	1914	1	0	0	1	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	t0013	1914	1	1	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	t0014	1914	1	0	1	0	0	0	copy fasta	GHSR	chr3	172438291	172453456