JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GHSR_chr3_172438291_172453456	0/0	t0015	1914	1	1	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GHSR_chr3_172438291_172453456	0/0	t0016	1914	1	1	0	0	0	0	copy fasta	GHSR	chr3	172438291	172453456
GID4_chr17_18034408_18073405	1/1	t0001	3220	84	8	17	45	2	10	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0002	3222	46	12	14	12	4	4	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0003	3220	26	10	9	2	4	1	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0004	3224	23	2	8	2	2	9	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0005	3222	17	13	2	0	0	2	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0006	3224	13	6	3	3	1	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0007	3223	11	0	0	11	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0008	3215	10	9	1	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0009	3218	8	0	3	4	1	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0010	3220	6	6	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0011	3221	5	1	3	0	0	1	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0012	3216	4	0	0	4	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0013	3218	4	3	1	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0014	3222	4	4	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0015	3226	4	0	3	1	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0016	3220	3	0	0	0	0	3	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0017	3220	3	0	0	3	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0018	3228	3	0	0	2	0	1	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0019	3220	2	1	1	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0020	3220	2	2	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0021	3220	2	2	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0022	3220	2	0	0	2	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0023	3220	2	0	0	2	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0024	3226	2	0	1	1	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0025	3222	1	0	1	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0026	3222	1	0	1	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0027	3220	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0028	3222	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0029	3216	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0030	3217	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0031	3218	1	0	0	0	0	1	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0032	3222	1	0	1	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0033	3220	1	0	0	1	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0034	3220	1	0	0	1	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0035	3223	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0036	3222	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0037	3224	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0038	3224	1	0	0	1	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0039	3226	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0040	3226	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0041	3226	1	0	0	1	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0042	3228	1	0	0	1	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0043	3228	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0044	3215	1	1	0	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0045	3224	1	0	0	1	0	0	copy fasta	GID4	chr17	18034408	18073405
GID4_chr17_18034408_18073405	0/0	t0046	3220	1	0	1	0	0	0	copy fasta	GID4	chr17	18034408	18073405
GID8_chr20_62933147_62953475	0/1	t0001	3683	108	3	32	52	4	16	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0002	3681	102	7	15	65	4	11	copy fasta	GID8	chr20	62933147	62953475