Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALG14_chr1_94969405_95077951	0/0	t0032	8730	2	0	0	2	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0033	8730	2	2	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0034	8732	2	0	0	2	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0035	8724	2	0	2	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0036	8725	2	2	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0037	8735	2	1	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0038	8736	2	2	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0039	8731	2	0	0	2	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0040	8730	2	2	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0041	8730	2	0	0	2	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0042	8728	2	2	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0043	8726	2	1	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0044	8728	2	0	1	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/1	t0045	8727	2	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0046	8731	2	0	0	2	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0047	8731	2	1	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0048	8732	2	0	1	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0049	8726	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0050	8730	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0051	8729	1	0	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0052	8730	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0053	8728	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0054	8729	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0055	8726	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0056	8725	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0057	8727	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0058	8728	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0059	8731	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0060	8729	1	0	0	0	0	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0061	8730	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0062	8731	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0063	8723	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0064	8733	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0065	8727	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0066	8725	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0067	8727	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0068	8730	1	0	0	0	0	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0069	8731	1	0	0	0	1	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0070	8727	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0071	8730	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0072	8726	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0073	8730	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0074	8729	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0075	8728	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0076	8728	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0077	8725	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0078	8727	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0079	8729	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0080	8729	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0081	8729	1	0	0	0	0	1	copy fasta	ALG14	chr1	94969405	95077951