JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GID8_chr20_62933147_62953475	0/0	t0003	3683	100	25	13	50	3	9	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0004	3683	33	16	4	10	1	2	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0005	3682	9	7	2	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0006	3682	6	5	1	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0007	3683	6	4	2	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0008	3684	6	6	0	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0009	3683	6	0	0	6	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0010	3681	6	4	2	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0011	3683	6	0	4	0	1	1	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0012	3683	5	5	0	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0013	3683	4	4	0	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0014	3683	4	0	0	4	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0015	3681	3	0	1	0	1	1	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0016	3683	3	3	0	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0017	3683	2	0	0	2	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0018	3683	2	1	1	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0019	3684	2	0	0	2	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0020	3681	2	0	0	0	0	2	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0021	3683	2	0	0	2	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0022	3683	1	0	1	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0023	3682	1	1	0	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0024	3683	1	0	1	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0025	3683	1	1	0	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0026	3683	1	1	0	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0027	3683	1	0	0	1	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0028	3683	1	0	0	1	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0029	3683	1	0	0	1	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0030	3683	1	0	0	1	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0031	3684	1	1	0	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0032	3684	1	1	0	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0033	3684	1	0	0	1	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0034	3683	1	1	0	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0035	3682	1	1	0	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0036	3681	1	0	0	1	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0037	3681	1	0	0	1	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0038	3681	1	0	0	1	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0039	3714	1	0	0	1	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0040	3683	1	0	0	0	0	1	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0041	3766	1	0	0	0	0	1	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0042	3683	1	0	1	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0043	3683	1	0	0	1	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0044	3683	1	0	1	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0045	3683	1	0	0	1	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	1/0	t0046	3683	1	0	0	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0047	3684	1	0	1	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GID8_chr20_62933147_62953475	0/0	t0048	3684	1	1	0	0	0	0	copy fasta	GID8	chr20	62933147	62953475
GIGYF1_chr7_100674507_100699250	0/0	t0001	3445	94	18	18	43	3	12	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0002	3445	66	3	11	46	0	6	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0003	3448	34	10	6	12	4	2	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0004	3446	19	1	5	10	0	3	copy fasta	GIGYF1	chr7	100674507	100699250