JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GIGYF1_chr7_100674507_100699250	0/0	t0055	3445	1	0	0	0	0	1	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0056	3446	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0057	3446	1	0	1	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0058	3446	1	0	0	0	0	1	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0059	3445	1	0	0	0	0	1	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0060	3420	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0061	3448	1	0	0	0	0	1	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0062	3448	1	0	1	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0063	3447	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0064	3447	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0065	3448	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0066	3448	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0067	3448	1	0	1	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0068	3449	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0069	3446	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0070	3450	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0071	3447	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0072	3450	1	0	0	1	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0073	3439	1	0	1	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0074	3453	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0075	3455	1	0	0	0	0	1	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0076	3450	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0077	3453	1	0	0	0	0	1	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0078	3451	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	1/0	t0079	3452	1	0	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0080	3453	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0081	3452	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0082	3445	1	0	0	0	1	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF1_chr7_100674507_100699250	0/0	t0083	3451	1	1	0	0	0	0	copy fasta	GIGYF1	chr7	100674507	100699250
GIGYF2_chr2_232692331_232865605	0/1	t0001	3917	160	30	30	79	6	14	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0002	3917	56	11	11	27	1	6	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0003	3917	49	12	5	26	2	4	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0004	3917	46	9	12	15	1	9	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0005	3917	7	0	3	4	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0006	3917	7	0	0	7	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0007	3917	7	7	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0008	3913	6	0	0	6	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0009	3917	3	3	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0010	3916	3	0	3	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0011	3902	2	0	1	0	0	1	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0012	3917	2	2	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	1/0	t0013	3917	2	0	0	1	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0014	3917	2	2	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0015	3917	2	0	0	2	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0016	3917	2	0	0	0	0	2	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0017	3917	2	2	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0018	3917	2	0	0	1	0	1	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0019	3917	1	1	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0020	3917	1	0	1	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0021	3917	1	0	1	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605