JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GIGYF2_chr2_232692331_232865605	0/0	t0022	3917	1	0	0	0	0	1	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0023	3917	1	1	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0024	3917	1	0	1	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0025	3917	1	1	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0026	3917	1	1	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0027	3917	1	1	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0028	3917	1	1	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0029	3917	1	0	0	0	0	1	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0030	3917	1	0	1	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0031	3917	1	0	0	0	0	1	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0032	3917	1	1	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0033	3917	1	1	0	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIGYF2_chr2_232692331_232865605	0/0	t0034	3917	1	0	1	0	0	0	copy fasta	GIGYF2	chr2	232692331	232865605
GIMAP1_chr7_150711613_150729284	1/1	t0001	3444	196	15	36	115	7	21	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0002	3449	51	0	6	42	1	2	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0003	3435	37	6	5	16	2	8	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0004	3441	22	6	11	0	2	3	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0005	3446	19	1	2	13	0	3	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0006	3449	15	12	1	2	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0007	3441	10	9	1	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0008	3451	7	0	2	5	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0009	3447	7	7	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0010	3447	7	7	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0011	3450	5	4	1	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0012	3449	4	4	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0013	3441	4	4	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0014	3446	4	0	0	0	0	4	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0015	3449	3	3	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0016	3447	3	3	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0017	3442	3	0	0	3	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0018	3460	3	3	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0019	3443	2	2	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0020	3441	2	2	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0021	3449	2	1	1	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0022	3447	2	2	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0023	3444	2	0	2	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0024	3449	1	0	0	1	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0025	3449	1	1	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0026	3449	1	1	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0027	3431	1	0	0	0	0	1	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0028	3435	1	0	0	0	0	1	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0029	3446	1	1	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0030	3446	1	0	1	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0031	3444	1	0	1	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0032	3444	1	0	0	1	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0033	3444	1	0	1	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0034	3444	1	0	0	0	0	1	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0035	3444	1	0	1	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0036	3444	1	0	0	1	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0037	3444	1	0	0	1	0	0	copy fasta	GIMAP1	chr7	150711613	150729284