JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GIMAP1_chr7_150711613_150729284	0/0	t0038	3444	1	1	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0039	3443	1	1	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0040	3441	1	1	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0041	3444	1	0	0	1	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0042	3444	1	0	0	0	0	1	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0043	3435	1	0	0	1	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0044	3449	1	1	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0045	3458	1	1	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0046	3456	1	1	0	0	0	0	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP1_chr7_150711613_150729284	0/0	t0047	3444	1	0	0	0	0	1	copy fasta	GIMAP1	chr7	150711613	150729284
GIMAP2_chr7_150680706_150698641	0/0	t0001	430	242	54	32	127	6	23	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	1/1	t0002	430	181	21	32	100	10	16	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	t0003	430	25	20	2	3	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	t0004	430	4	4	0	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	t0005	430	1	0	0	0	0	1	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	t0006	430	1	1	0	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	t0007	430	1	0	1	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP2_chr7_150680706_150698641	0/0	t0008	430	1	0	1	0	0	0	copy fasta	GIMAP2	chr7	150680706	150698641
GIMAP4_chr7_150562390_150578953	1/1	t0001	956	411	67	75	213	15	39	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	t0002	956	28	17	0	9	1	1	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	t0003	956	8	7	1	0	0	0	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	t0004	956	6	0	0	0	0	6	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP4_chr7_150562390_150578953	0/0	t0005	956	1	1	0	0	0	0	copy fasta	GIMAP4	chr7	150562390	150578953
GIMAP5_chr7_150732418_150748646	1/1	t0001	881	249	41	42	125	7	32	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	t0002	881	80	0	9	65	1	5	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	t0003	881	40	18	15	2	3	2	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	t0004	881	14	10	0	3	0	1	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	t0005	881	13	13	0	0	0	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	t0006	881	12	11	1	0	0	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	t0007	881	4	0	3	0	1	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	t0008	881	4	0	0	0	0	4	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	t0009	881	3	0	0	3	0	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	t0010	881	2	2	0	0	0	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP5_chr7_150732418_150748646	0/0	t0011	881	1	1	0	0	0	0	copy fasta	GIMAP5	chr7	150732418	150748646
GIMAP6_chr7_150620375_150637385	0/0	t0001	2563	133	32	17	63	8	13	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0002	2563	109	22	21	51	1	14	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/1	t0003	2563	86	7	25	40	7	6	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0004	2563	67	2	11	50	0	4	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0005	2563	17	16	1	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0006	2563	4	4	0	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0007	2563	4	4	0	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0008	2563	3	3	0	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0009	2563	3	3	0	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0010	2563	3	0	0	0	0	3	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0011	2563	2	2	0	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0012	2563	2	0	0	0	0	2	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0013	2563	2	0	2	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0014	2563	2	0	0	0	0	2	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0015	2563	1	0	1	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	1/0	t0016	2562	1	0	0	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385