JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GIMAP6_chr7_150620375_150637385	0/0	t0017	2563	1	0	1	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0018	2563	1	1	0	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0019	2563	1	0	0	1	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0020	2563	1	0	0	1	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0021	2563	1	0	1	0	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0022	2563	1	0	0	1	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP6_chr7_150620375_150637385	0/0	t0023	2563	1	0	0	1	0	0	copy fasta	GIMAP6	chr7	150620375	150637385
GIMAP7_chr7_150509872_150526073	1/0	t0001	312	158	12	25	98	4	18	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0002	320	116	26	11	70	0	9	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/1	t0003	310	73	5	18	34	6	9	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0004	310	34	8	13	1	5	7	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0005	324	21	9	1	10	1	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0006	320	13	9	1	3	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0007	312	9	0	1	8	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0008	316	8	8	0	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0009	316	6	0	0	0	0	6	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0010	322	4	0	0	4	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0011	326	4	1	0	2	0	1	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0012	312	4	4	0	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0013	322	3	3	0	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0014	310	3	2	1	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0015	312	2	1	0	1	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0016	318	2	2	0	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0017	328	2	1	0	1	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0018	308	1	1	0	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0019	312	1	1	0	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0020	326	1	1	0	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP7_chr7_150509872_150526073	0/0	t0021	324	1	0	1	0	0	0	copy fasta	GIMAP7	chr7	150509872	150526073
GIMAP8_chr7_150445630_150484393	1/1	t0001	2188	289	47	56	136	12	36	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	t0002	2188	43	13	3	25	0	2	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	t0003	2188	13	12	1	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	t0004	2188	9	8	1	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	t0005	2188	5	4	1	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	t0006	2188	5	5	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	t0007	2188	2	2	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	t0008	2188	1	0	0	1	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	t0009	2188	1	0	0	1	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	t0010	2188	1	0	0	1	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	t0011	2188	1	0	0	0	0	1	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	t0012	2188	1	0	0	0	0	1	copy fasta	GIMAP8	chr7	150445630	150484393
GIMAP8_chr7_150445630_150484393	0/0	t0013	2188	1	1	0	0	0	0	copy fasta	GIMAP8	chr7	150445630	150484393
GIMD1_chr4_106352392_106373778	1/1	t0001	863	340	69	68	158	15	28	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	t0002	863	94	15	10	52	1	16	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	t0003	863	14	12	2	0	0	0	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	t0004	863	1	1	0	0	0	0	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	t0005	863	1	1	0	0	0	0	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	t0006	863	1	0	0	1	0	0	copy fasta	GIMD1	chr4	106352392	106373778
GIMD1_chr4_106352392_106373778	0/0	t0007	863	1	0	0	1	0	0	copy fasta	GIMD1	chr4	106352392	106373778
GIN1_chr5_103081000_103125138	1/0	t0001	1981	153	40	29	63	10	10	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/1	t0002	1981	106	10	16	68	3	8	copy fasta	GIN1	chr5	103081000	103125138