JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GIN1_chr5_103081000_103125138	0/0	t0003	1981	15	15	0	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	t0004	1981	12	11	1	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	t0005	1973	5	3	2	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	t0006	1981	5	5	0	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	t0007	1981	4	1	1	0	1	1	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	t0008	1974	4	4	0	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	t0009	1981	3	3	0	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	t0010	1981	3	0	0	3	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	t0011	1981	3	0	3	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	t0012	1981	3	0	0	3	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	t0013	1981	2	2	0	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	t0014	1981	1	0	0	1	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	t0015	1981	1	0	1	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	t0016	1981	1	0	0	0	0	1	copy fasta	GIN1	chr5	103081000	103125138
GIN1_chr5_103081000_103125138	0/0	t0017	1981	1	0	1	0	0	0	copy fasta	GIN1	chr5	103081000	103125138
GINM1_chr6_149561375_149596748	1/0	t0001	951	115	29	27	33	9	16	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0002	953	71	1	9	53	0	8	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/1	t0003	952	68	16	18	14	5	14	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0004	952	60	8	14	38	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0005	951	11	11	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0006	951	11	7	0	4	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0007	954	11	2	7	2	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0008	952	6	0	0	6	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0009	950	5	5	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0010	951	3	3	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0011	952	2	0	0	0	0	2	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0012	952	2	1	1	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0013	953	2	2	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0014	952	2	1	0	0	0	1	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0015	951	1	1	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0016	951	1	1	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0017	951	1	1	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0018	953	1	0	0	1	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0019	951	1	1	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0020	949	1	1	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0021	951	1	1	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0022	952	1	0	0	0	0	1	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0023	953	1	1	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0024	953	1	0	0	1	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINM1_chr6_149561375_149596748	0/0	t0025	951	1	1	0	0	0	0	copy fasta	GINM1	chr6	149561375	149596748
GINS1_chr20_25402673_25453563	0/1	t0001	2720	176	22	30	102	4	17	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	1/0	t0002	2721	146	47	41	24	11	22	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0003	2720	5	5	0	0	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0004	2720	5	2	2	0	0	1	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0005	2720	4	4	0	0	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0006	2720	4	2	1	0	1	0	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0007	2720	3	0	0	3	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0008	2720	2	2	0	0	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0009	3034	2	2	0	0	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0010	3035	2	2	0	0	0	0	copy fasta	GINS1	chr20	25402673	25453563