JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GINS1_chr20_25402673_25453563	0/0	t0011	2721	2	2	0	0	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0012	2721	1	1	0	0	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0013	2721	1	0	1	0	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0014	2721	1	1	0	0	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0015	2721	1	0	1	0	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0016	2720	1	1	0	0	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0017	2720	1	1	0	0	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0018	2720	1	0	0	1	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0019	2720	1	0	0	0	0	1	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	t0020	2720	1	0	0	0	0	1	copy fasta	GINS1	chr20	25402673	25453563
GINS2_chr16_85671198_85693954	0/0	t0001	2071	136	3	16	92	7	18	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	1/1	t0002	2071	89	21	30	23	7	6	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0003	2073	44	2	7	29	2	4	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0004	2071	31	3	2	23	0	3	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0005	2071	14	11	1	2	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0006	2071	14	14	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0007	2071	14	6	6	0	0	2	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0008	2071	10	6	1	3	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0009	2073	9	0	0	9	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0010	2071	9	1	0	6	0	2	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0011	2071	8	0	0	2	0	6	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0012	2073	8	0	2	5	1	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0013	2073	8	7	1	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0014	2071	6	1	3	2	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0015	2073	5	2	1	0	0	2	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0016	2071	5	0	0	5	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0017	2073	5	1	3	0	1	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0018	2050	5	4	1	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0019	2072	4	4	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0020	2071	3	0	0	3	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0021	2073	2	2	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0022	2071	2	2	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0023	2071	2	2	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0024	2071	2	0	0	1	0	1	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0025	2071	2	0	0	2	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0026	2072	2	0	0	1	0	1	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0027	2071	2	0	2	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0028	2071	2	0	2	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0029	2071	2	0	0	2	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0030	2071	2	0	0	0	0	2	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0031	2073	2	0	0	2	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0032	2071	1	1	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0033	2071	1	1	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0034	2073	1	0	0	0	0	1	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0035	2073	1	0	1	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0036	2073	1	0	0	1	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0037	2071	1	1	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0038	2071	1	0	0	1	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0039	2071	1	0	0	0	0	1	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0040	2071	1	1	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954