JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GINS2_chr16_85671198_85693954	0/0	t0041	2071	1	0	0	1	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0042	2071	1	1	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0043	2071	1	0	1	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0044	2071	1	0	0	1	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0045	2050	1	1	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0046	2071	1	0	1	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0047	2071	1	0	0	1	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0048	2071	1	1	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0049	2072	1	0	0	1	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0050	2073	1	0	1	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0051	2072	1	1	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	t0052	2071	1	0	0	0	0	1	copy fasta	GINS2	chr16	85671198	85693954
GINS3_chr16_58387471_58411147	0/0	t0001	1554	248	52	48	113	10	25	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	1/0	t0002	1550	85	6	10	55	4	9	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	t0003	1554	71	21	8	29	0	13	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/1	t0004	1554	9	2	6	0	0	0	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	t0005	1554	3	3	0	0	0	0	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	t0006	1554	3	3	0	0	0	0	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	t0007	1554	2	0	2	0	0	0	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	t0008	1550	2	2	0	0	0	0	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	t0009	1554	2	2	0	0	0	0	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	t0010	1554	2	2	0	0	0	0	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	t0011	1554	2	2	0	0	0	0	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	t0012	1554	1	0	0	0	0	1	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	t0013	1554	1	0	0	1	0	0	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	t0014	1554	1	1	0	0	0	0	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	t0015	1554	1	0	0	0	1	0	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	t0016	1554	1	0	0	0	1	0	copy fasta	GINS3	chr16	58387471	58411147
GINS4_chr8_41524261_41550030	1/0	t0001	3099	186	18	34	99	10	24	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0002	3098	75	30	15	22	0	8	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0003	3099	56	4	12	28	5	7	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0004	3098	24	6	0	16	1	1	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/1	t0005	3098	17	5	9	0	1	1	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0006	3099	17	0	0	17	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0007	3099	8	8	0	0	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0008	3099	5	5	0	0	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0009	3099	3	0	0	0	0	3	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0010	3099	3	0	0	3	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0011	3098	3	0	1	0	1	1	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0012	3098	3	2	0	1	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0013	3099	3	2	1	0	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0014	3099	2	0	0	2	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0015	3099	2	1	0	1	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0016	3100	2	0	1	1	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0017	3099	2	2	0	0	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0018	3098	1	1	0	0	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0019	3099	1	0	0	1	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0020	3100	1	0	0	1	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0021	3099	1	0	1	0	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0022	3100	1	0	0	0	0	1	copy fasta	GINS4	chr8	41524261	41550030