JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GINS4_chr8_41524261_41550030	0/0	t0023	3098	1	1	0	0	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0024	3098	1	0	1	0	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0025	3099	1	0	0	1	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0026	3099	1	0	1	0	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0027	3099	1	0	0	1	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0028	3099	1	1	0	0	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0029	3099	1	1	0	0	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0030	3098	1	1	0	0	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0031	3099	1	1	0	0	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	t0032	3099	1	1	0	0	0	0	copy fasta	GINS4	chr8	41524261	41550030
GIPC1_chr19_14472762_14501127	1/0	t0001	920	164	27	19	83	7	27	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0002	917	51	13	24	6	4	4	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/1	t0003	923	45	7	11	21	2	3	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0004	923	43	0	9	27	2	5	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0005	917	15	1	2	12	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0006	926	11	3	6	1	0	1	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0007	917	8	0	0	5	2	1	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0008	920	8	0	0	8	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0009	911	6	6	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0010	923	5	4	1	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0011	929	4	3	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0012	932	4	4	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0013	941	4	1	0	3	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0014	944	4	1	0	3	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0015	920	4	0	3	0	1	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0016	932	3	3	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0017	917	3	3	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0018	920	3	0	1	2	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0019	923	3	0	0	3	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0020	938	3	2	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0021	968	3	0	0	3	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0022	917	2	2	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0023	899	2	0	0	0	0	2	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0024	926	2	0	0	1	0	1	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0025	932	2	0	0	2	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0026	926	2	1	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0027	947	2	0	0	2	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0028	950	2	0	0	2	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0029	956	2	0	0	2	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0030	935	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0031	938	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0032	902	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0033	905	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0034	908	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0035	917	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0036	917	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0037	917	1	0	0	0	0	1	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0038	917	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0039	920	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0040	920	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127