Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
A4GALT_chr22_42687121_42725870	0/0	t0020	1006	1	0	0	1	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0021	1031	1	1	0	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0022	1031	1	1	0	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0023	1031	1	1	0	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0024	1032	1	1	0	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0025	1032	1	1	0	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0026	1032	1	0	0	1	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0027	1032	1	0	1	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GNT_chr3_138118713_138137390	0/0	t0001	757	182	46	44	69	6	17	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	1/1	t0002	757	130	11	15	82	4	16	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	t0003	757	48	17	2	23	0	6	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	t0004	757	12	6	2	0	2	2	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	t0005	757	8	6	1	1	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	t0006	757	7	6	1	0	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	t0007	757	4	0	0	4	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	t0008	757	3	3	0	0	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	t0009	757	1	1	0	0	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	t0010	757	1	0	0	1	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	t0011	757	1	0	1	0	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	t0012	757	1	0	0	0	0	1	copy fasta	A4GNT	chr3	138118713	138137390
AAAS_chr12_53302460_53326610	1/1	t0001	175	326	90	66	120	10	38	copy fasta	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	0/0	t0002	175	3	1	2	0	0	0	copy fasta	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	0/0	t0003	175	1	1	0	0	0	0	copy fasta	AAAS	chr12	53302460	53326610
AACS_chr12_125060435_125148316	1/0	t0001	1238	216	81	36	67	4	27	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	t0002	1238	74	1	13	49	4	7	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	t0003	1238	24	0	11	13	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	t0004	1238	16	0	0	15	0	1	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	t0005	1238	14	8	4	0	2	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/1	t0006	1238	12	0	5	0	4	2	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	t0007	1238	4	0	0	0	0	4	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	t0008	1238	1	0	0	1	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	t0009	1238	1	0	0	1	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	t0010	1238	1	0	0	0	0	1	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	t0011	1238	1	0	1	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AADACL2_chr3_151728927_151766339	0/0	t0001	3856	86	12	19	47	1	7	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	t0002	3859	35	2	5	24	2	2	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	t0003	3848	33	2	1	27	1	2	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	t0004	3857	29	2	6	16	1	4	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	t0005	3861	23	4	5	12	1	1	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	t0006	3834	17	13	4	0	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	t0007	3850	15	8	1	5	0	1	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	t0008	3852	14	4	0	8	1	1	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	t0009	3844	14	0	8	1	4	1	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	1/0	t0010	3855	14	2	4	6	0	1	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	t0011	3865	11	2	4	4	0	1	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	t0012	3863	10	1	1	6	0	2	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	t0013	3846	8	3	0	5	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	t0014	3865	8	1	4	3	0	0	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	t0015	3863	8	2	2	2	0	2	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	0/0	t0016	3857	7	0	3	0	2	2	copy fasta	AADACL2	chr3	151728927	151766339