Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCG5_chr2_43807472_43843839	0/0	t0003	805	33	15	7	2	5	4	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	t0004	805	12	6	2	3	1	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	t0005	805	9	5	3	0	0	1	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	t0006	805	7	6	1	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	t0007	805	6	4	0	1	0	1	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	t0008	804	4	4	0	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	t0009	805	3	0	0	0	0	3	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	t0010	805	2	1	1	0	0	0	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	t0011	805	2	0	0	0	0	2	copy fasta	ABCG5	chr2	43807472	43843839
ABCG5_chr2_43807472_43843839	0/0	t0012	805	1	0	0	0	0	1	copy fasta	ABCG5	chr2	43807472	43843839
ABCG8_chr2_43833971_43887988	0/0	t0001	5158	17	0	1	16	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0002	5155	17	6	9	0	1	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0003	5162	16	4	3	2	1	6	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0004	5162	15	0	3	7	1	4	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0005	5163	13	0	2	11	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0006	5158	13	0	7	6	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0007	5159	10	0	8	0	1	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0008	5159	9	3	4	0	1	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0009	5162	7	0	0	7	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0010	5162	7	6	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0011	5160	7	0	4	1	1	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0012	5159	7	7	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0013	5159	6	6	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0014	5160	5	0	1	0	0	4	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0015	5155	5	2	3	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0016	5164	5	0	0	5	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0017	5156	5	0	3	2	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0018	5158	4	0	0	4	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0019	5163	4	0	0	4	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0020	5156	4	0	0	4	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0021	5162	4	3	1	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0022	5155	4	2	2	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0023	5163	4	0	1	0	1	2	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0024	5160	3	3	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0025	5154	3	3	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0026	5159	3	0	3	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0027	5163	3	0	1	1	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0028	5156	3	1	2	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0029	5158	2	2	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0030	5160	2	2	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0031	5159	2	1	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0032	5159	2	0	0	2	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0033	5162	2	0	0	2	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0034	5163	2	0	0	2	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0035	5163	2	0	1	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0036	5163	2	0	0	2	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0037	5156	2	2	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0038	5162	2	2	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	0/0	t0039	5158	2	2	0	0	0	0	copy fasta	ABCG8	chr2	43833971	43887988
ABCG8_chr2_43833971_43887988	1/0	t0040	5159	2	0	0	0	0	1	copy fasta	ABCG8	chr2	43833971	43887988