Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ALG14_chr1_94969405_95077951	0/0	t0082	8734	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0083	8730	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0084	8733	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0085	8729	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0086	8730	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0087	8730	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0088	8731	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0089	8726	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0090	8725	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0091	8726	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0092	8726	1	0	0	0	0	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0093	8727	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0094	8726	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0095	8725	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0096	8725	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0097	8730	1	0	0	0	1	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0098	8731	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0099	8732	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0100	8733	1	0	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0101	8734	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0102	8730	1	0	0	0	0	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0103	8731	1	0	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0104	8727	1	0	0	0	0	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0105	8731	1	0	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0106	8730	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0107	8731	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0108	8731	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0109	8730	1	0	1	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0110	8731	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0111	8727	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0112	8728	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0113	8728	1	1	0	0	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0114	8730	1	0	0	0	0	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0115	8729	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0116	8730	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0117	8729	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0118	8730	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0119	8729	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0120	8732	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0121	8729	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0122	8728	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0123	8732	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0124	8731	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0125	8730	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0126	8729	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0127	8731	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0128	8729	1	0	0	0	0	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0129	8729	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0130	8730	1	0	0	0	0	1	copy fasta	ALG14	chr1	94969405	95077951
ALG14_chr1_94969405_95077951	0/0	t0131	8729	1	0	0	1	0	0	copy fasta	ALG14	chr1	94969405	95077951