JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GIPC1_chr19_14472762_14501127	0/0	t0041	920	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0042	923	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0043	923	1	0	0	0	0	1	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0044	929	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0045	932	1	0	1	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0046	962	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0047	947	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0048	1091	1	0	1	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0049	896	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0050	920	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0051	929	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0052	932	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0053	935	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0054	935	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0055	941	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0056	947	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0057	959	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0058	962	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0059	988	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0060	971	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0061	974	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0062	980	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	t0063	1010	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC2_chr1_78040966_78143444	0/0	t0001	2830	120	20	17	73	5	5	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0002	2834	56	15	8	25	0	8	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0003	2832	41	24	6	2	1	8	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/1	t0004	2834	29	0	21	0	5	2	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0005	2834	21	3	3	10	1	4	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0006	2835	14	5	0	4	0	5	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0007	2833	7	5	1	0	1	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0008	2833	6	6	0	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0009	2831	4	4	0	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0010	2832	3	1	2	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0011	2830	3	0	2	0	0	1	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	1/0	t0012	2831	2	0	1	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0013	2831	2	0	1	0	1	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0014	2835	2	1	1	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0015	2835	2	0	0	2	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0016	2830	2	0	0	2	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0017	2834	2	0	0	1	0	1	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0018	2835	1	0	1	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0019	2827	1	0	0	0	0	1	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0020	2831	1	0	0	0	0	1	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0021	2832	1	1	0	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0022	2930	1	0	0	1	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0023	2834	1	0	0	1	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0024	2834	1	0	0	1	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0025	2834	1	1	0	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0026	2835	1	0	0	1	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0027	2832	1	1	0	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444