JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GIPC2_chr1_78040966_78143444	0/0	t0028	2835	1	1	0	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0029	2836	1	1	0	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0030	2830	1	0	0	1	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0031	2830	1	0	0	1	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0032	2834	1	0	0	1	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	t0033	2834	1	1	0	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC3_chr19_3580478_3598541	1/0	t0001	3472	123	1	20	95	2	4	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0002	3472	78	6	12	37	3	20	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0003	3471	56	12	20	11	4	9	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0004	3471	20	14	0	6	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0005	3472	16	0	9	2	3	2	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0006	3472	15	12	0	0	0	3	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0007	3472	9	0	1	5	2	1	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0008	3472	9	0	0	9	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0009	3472	8	8	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0010	3472	5	0	0	1	0	4	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0011	3472	5	0	2	0	0	3	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0012	3472	5	0	0	5	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0013	3364	5	4	1	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0014	3472	4	0	0	4	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0015	3363	4	0	4	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0016	3472	3	0	2	0	0	1	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0017	3472	3	0	2	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0018	3472	3	2	1	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0019	3472	3	3	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0020	3363	3	0	2	0	1	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0021	3472	2	2	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0022	3472	2	0	0	1	1	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0023	3471	2	2	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0024	3364	2	2	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0025	3472	2	2	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0026	3363	2	2	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0027	3472	1	0	0	0	0	1	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/1	t0028	3471	1	0	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0029	3471	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0030	3471	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0031	3472	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0032	3436	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0033	3472	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0034	3472	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0035	3472	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0036	3472	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0037	3472	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0038	3472	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0039	3472	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0040	3471	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0041	3472	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0042	3471	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0043	3471	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0044	3471	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541