JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GIPC3_chr19_3580478_3598541	0/0	t0045	3472	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0046	3472	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0047	3471	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0048	3472	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0049	3472	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0050	3472	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0051	3580	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0052	3472	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0053	3471	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0054	3472	1	0	0	0	0	1	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0055	3472	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0056	3471	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0057	3472	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0058	3472	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0059	3472	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0060	3472	1	0	0	0	0	1	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0061	3364	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0062	3472	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0063	3471	1	0	1	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0064	3471	1	0	1	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0065	3471	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0066	3471	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	t0067	3472	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPR_chr19_45663221_45688722	0/1	t0001	1909	148	27	39	55	8	18	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0002	1908	125	19	18	70	3	15	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	1/0	t0003	1910	54	14	6	24	2	7	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0004	1909	14	1	1	9	2	1	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0005	1909	9	8	1	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0006	1909	7	2	0	4	0	1	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0007	1909	6	0	5	1	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0008	1909	6	0	4	0	1	1	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0009	1910	6	0	0	6	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0010	1910	5	4	1	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0011	1910	4	0	0	4	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0012	1910	4	4	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0013	1909	3	0	0	2	0	1	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0014	1909	3	2	1	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0015	1909	2	1	1	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0016	1909	2	2	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0017	1910	2	1	0	1	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0018	1907	1	0	0	1	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0019	1908	1	0	0	1	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0020	1908	1	0	1	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0021	1908	1	0	0	1	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0022	1908	1	0	1	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0023	1909	1	1	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0024	1909	1	0	0	1	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0025	1927	1	0	0	1	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0026	1908	1	1	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0027	1909	1	1	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722