JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GIPR_chr19_45663221_45688722	0/0	t0028	1909	1	1	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0029	1910	1	0	0	1	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0030	1909	1	0	0	1	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0031	1911	1	0	0	1	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0032	1911	1	1	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	t0033	1910	1	0	1	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIP_chr17_48953554_48973596	1/0	t0001	255	283	69	48	124	11	30	copy fasta	GIP	chr17	48953554	48973596
GIP_chr17_48953554_48973596	0/0	t0002	255	97	20	29	39	3	6	copy fasta	GIP	chr17	48953554	48973596
GIP_chr17_48953554_48973596	0/1	t0003	255	25	1	4	13	2	4	copy fasta	GIP	chr17	48953554	48973596
GIP_chr17_48953554_48973596	0/0	t0004	255	1	0	1	0	0	0	copy fasta	GIP	chr17	48953554	48973596
GIT1_chr17_29568475_29594648	1/0	t0001	1498	294	54	57	135	12	35	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/1	t0002	1499	74	19	17	21	6	10	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	t0003	1502	16	15	1	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	t0004	1499	2	2	0	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	t0005	1498	2	0	2	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	t0006	1498	2	0	2	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	t0007	1498	1	0	0	1	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	t0008	1498	1	1	0	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	t0009	1498	1	1	0	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	t0010	1499	1	0	0	1	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	t0011	1499	1	0	1	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	t0012	1498	1	0	0	1	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	t0013	1498	1	0	0	0	0	1	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	t0014	1509	1	1	0	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	t0015	1499	1	1	0	0	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	t0016	1498	1	0	0	1	0	0	copy fasta	GIT1	chr17	29568475	29594648
GIT2_chr12_109924804_110001368	1/1	t0001	3319	84	14	33	28	3	4	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0002	3319	42	12	9	12	4	5	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0003	3319	33	23	4	4	0	2	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0004	3319	25	1	1	21	0	2	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0005	3319	13	5	7	0	1	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0006	3319	7	7	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0007	3319	6	6	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0008	3319	5	5	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0009	3319	5	0	2	1	0	2	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0010	3319	3	0	0	3	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0011	3319	2	2	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0012	3319	2	0	2	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0013	3319	2	2	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0014	3319	2	2	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0015	3319	1	1	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0016	3319	1	0	0	1	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0017	3319	1	1	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0018	3319	1	1	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0019	3319	1	1	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0020	3319	1	1	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0021	3319	1	1	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0022	3319	1	0	0	0	0	1	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0023	3319	1	1	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	t0024	3319	1	1	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368