JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GIT2_chr12_109924804_110001368	0/0	t0025	3319	1	1	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GJA10_chr6_89889469_89901120	0/1	t0001	21	308	64	54	149	10	30	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	1/0	t0002	21	78	24	20	11	8	14	copy fasta	GJA10	chr6	89889469	89901120
GJA1_chr6_121430646_121454727	1/0	t0001	1935	200	11	31	123	9	25	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	t0002	1936	111	48	14	39	2	8	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	t0003	1936	31	4	2	24	0	1	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	t0004	1936	26	25	1	0	0	0	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	t0005	1936	23	0	19	1	0	3	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/1	t0006	1935	11	1	3	0	3	3	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	t0007	1936	3	0	0	0	0	3	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	t0008	1936	3	3	0	0	0	0	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	t0009	1935	2	0	0	2	0	0	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	t0010	1936	1	1	0	0	0	0	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	t0011	1935	1	0	0	1	0	0	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	t0012	1936	1	1	0	0	0	0	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	t0013	1935	1	1	0	0	0	0	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	t0014	1935	1	1	0	0	0	0	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	t0015	1935	1	0	0	0	0	1	copy fasta	GJA1	chr6	121430646	121454727
GJA3_chr13_20133255_20166052	0/0	t0001	3904	104	2	28	53	5	16	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/1	t0002	3907	87	11	25	28	7	15	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0003	3907	83	16	8	49	4	6	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0004	3907	41	28	6	0	1	6	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	1/0	t0005	3907	13	12	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0006	3906	7	5	2	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0007	3906	5	3	0	0	0	2	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0008	3904	4	0	4	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0009	3907	4	0	4	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0010	3904	4	0	0	4	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0011	3907	3	3	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0012	3897	3	2	1	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0013	3907	3	0	0	3	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0014	3904	2	2	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0015	3906	2	0	0	2	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0016	3907	2	2	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0017	3904	1	0	0	1	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0018	3904	1	0	0	1	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0019	3905	1	0	0	1	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0020	3905	1	0	0	1	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0021	3905	1	0	0	1	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0022	3907	1	0	1	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0023	3907	1	0	0	1	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0024	3907	1	1	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0025	3907	1	1	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0026	3907	1	1	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0027	3907	1	0	0	0	0	1	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0028	3907	1	1	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0029	3907	1	1	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0030	3907	1	0	1	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0031	3907	1	1	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0032	3907	1	1	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052