JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GJA3_chr13_20133255_20166052	0/0	t0033	3907	1	0	0	0	0	1	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0034	3907	1	0	0	1	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0035	3907	1	1	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0036	3907	1	0	0	0	1	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0037	3907	1	1	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0038	3907	1	0	0	1	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0039	3907	1	0	0	0	0	1	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0040	3904	1	0	0	1	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	t0041	3907	1	1	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA4_chr1_34787999_34800747	0/1	t0001	618	124	17	17	71	6	12	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	1/0	t0002	620	119	0	28	66	5	19	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	t0003	620	98	46	18	27	3	4	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	t0004	620	55	19	7	19	4	6	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	t0005	619	5	5	0	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	t0006	620	4	4	0	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	t0007	620	4	4	0	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	t0008	620	3	3	0	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	t0009	618	1	0	0	0	0	1	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	t0010	618	1	0	0	1	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	t0011	620	1	0	0	1	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	t0012	618	1	0	0	1	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA5_chr1_147751199_147765602	1/1	t0001	2101	171	31	32	74	10	22	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0002	2076	143	36	27	65	2	13	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0003	2076	56	9	4	42	0	1	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0004	2076	26	3	3	20	0	0	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0005	2076	15	1	9	0	4	1	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0006	2076	15	0	1	14	0	0	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0007	2076	5	5	0	0	0	0	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0008	2076	5	5	0	0	0	0	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0009	2076	4	1	0	0	0	3	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0010	2101	2	0	0	0	0	2	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0011	2101	1	0	0	1	0	0	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0012	2076	1	1	0	0	0	0	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0013	2076	1	0	0	1	0	0	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0014	2076	1	1	0	0	0	0	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0015	2076	1	0	0	1	0	0	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0016	2076	1	0	0	0	0	1	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0017	2101	1	0	0	0	0	1	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	t0018	2101	1	1	0	0	0	0	copy fasta	GJA5	chr1	147751199	147765602
GJA8_chr1_147897795_147914269	1/1	t0001	91	471	93	84	226	16	50	copy fasta	GJA8	chr1	147897795	147914269
GJA8_chr1_147897795_147914269	0/0	t0002	91	1	1	0	0	0	0	copy fasta	GJA8	chr1	147897795	147914269
GJA9_chr1_38869069_38886587	0/1	t0001	735	128	21	31	57	3	15	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	t0002	735	121	33	16	56	4	12	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	1/0	t0003	734	93	1	9	61	6	15	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	t0004	734	65	17	14	24	5	5	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	t0005	735	10	10	0	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	t0006	733	9	5	2	2	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	t0007	735	9	9	0	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	t0008	734	2	0	2	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	t0009	734	1	0	0	1	0	0	copy fasta	GJA9	chr1	38869069	38886587