JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GJA9_chr1_38869069_38886587	0/0	t0010	734	1	0	0	1	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	t0011	734	1	0	0	1	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	t0012	734	1	0	0	0	0	1	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	t0013	735	1	0	0	1	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	t0014	735	1	1	0	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	t0015	734	1	1	0	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJB1_chrX_71218224_71230516	1/1	t0001	1086	303	65	57	137	12	30	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	t0002	1086	7	6	1	0	0	0	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	t0003	1086	6	4	2	0	0	0	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	t0004	1086	5	4	1	0	0	0	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	t0005	1086	1	1	0	0	0	0	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	t0006	1086	1	0	1	0	0	0	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	t0007	1086	1	0	0	1	0	0	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	t0008	1091	1	0	0	1	0	0	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	t0009	1087	1	0	0	1	0	0	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	t0010	1086	1	0	0	0	0	1	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	t0011	1086	1	0	0	0	0	1	copy fasta	GJB1	chrX	71218224	71230516
GJB2_chr13_20182470_20197938	0/0	t0001	1610	206	19	39	99	16	33	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0002	1610	113	10	12	85	0	6	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0003	1610	40	30	7	0	2	1	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0004	1610	20	20	0	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0005	1610	8	5	3	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0006	1610	6	4	2	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/1	t0007	1610	6	1	2	2	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0008	1610	4	3	1	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0009	1610	3	3	0	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0010	1610	3	3	0	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0011	1610	2	0	2	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0012	1610	1	0	0	1	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0013	1610	1	1	0	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0014	1610	1	0	0	1	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0015	1610	1	0	0	1	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0016	1610	1	0	0	1	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	1/0	t0017	1610	1	0	0	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0018	1610	1	1	0	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0019	1610	1	0	0	1	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	t0020	1604	1	0	0	1	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB3_chr1_34776214_34791364	1/0	t0001	1380	150	0	33	93	3	20	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/1	t0002	1380	106	11	3	74	4	13	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	t0003	1381	97	47	17	25	5	3	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	t0004	1380	25	11	2	1	4	7	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	t0005	1380	19	0	3	16	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	t0006	1380	18	4	11	0	2	1	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	t0007	1380	8	7	1	0	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	t0008	1380	7	5	2	0	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	t0009	1380	4	4	0	0	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	t0010	1380	3	3	0	0	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	t0011	1380	1	0	0	0	0	1	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	t0012	1380	1	0	0	1	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	t0013	1380	1	0	1	0	0	0	copy fasta	GJB3	chr1	34776214	34791364