JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GJB3_chr1_34776214_34791364	0/0	t0014	1380	1	0	0	0	0	1	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	t0015	1380	1	0	1	0	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	t0016	1380	1	1	0	0	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	t0017	1381	1	1	0	0	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB4_chr1_34754740_34767327	1/1	t0001	644	354	48	62	181	18	43	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	t0002	644	76	32	13	28	0	3	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	t0003	644	13	13	0	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	t0004	644	7	5	2	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	t0005	644	5	0	0	5	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	t0006	644	2	0	0	2	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	t0007	644	2	0	0	0	0	2	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	t0008	644	2	2	0	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	t0009	656	1	0	1	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB5_chr1_34750047_34763512	1/1	t0001	534	185	10	47	95	9	22	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	t0002	534	101	46	13	24	6	12	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	t0003	534	87	31	9	37	1	9	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	t0004	534	78	0	3	72	0	3	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	t0005	534	4	4	0	0	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	t0006	534	3	0	0	3	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	t0007	534	2	2	0	0	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	t0008	534	2	0	2	0	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	t0009	534	2	2	0	0	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	t0010	534	1	1	0	0	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	t0011	534	1	1	0	0	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	t0012	534	1	1	0	0	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	t0013	534	1	0	0	1	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB6_chr13_20216962_20237319	1/0	t0001	1279	284	41	62	132	11	37	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/1	t0002	1279	85	29	5	44	2	4	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0003	1279	33	2	5	21	1	4	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0004	1279	10	0	0	10	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0005	1279	9	9	0	0	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0006	1279	8	1	2	4	0	1	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0007	1280	6	6	0	0	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0008	1279	6	2	2	0	0	2	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0009	1279	3	3	0	0	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0010	1279	3	3	0	0	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0011	1279	3	2	1	0	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0012	1279	2	0	0	0	2	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0013	1279	1	1	0	0	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0014	1279	1	0	1	0	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0015	1279	1	0	1	0	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0016	1279	1	0	1	0	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0017	1279	1	1	0	0	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0018	1279	1	0	1	0	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0019	1279	1	0	1	0	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	t0020	1279	1	0	0	1	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB7_chr6_87277980_87334278	0/1	t0001	1607	121	33	24	50	3	10	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0002	1607	98	5	20	56	5	12	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	1/0	t0003	1608	92	11	21	35	7	17	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0004	1603	23	1	0	22	0	0	copy fasta	GJB7	chr6	87277980	87334278