JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GJB7_chr6_87277980_87334278	0/0	t0005	1607	17	14	3	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0006	1595	9	9	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0007	1596	3	3	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0008	1595	3	3	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0009	1607	3	0	0	0	0	3	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0010	1607	2	2	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0011	1608	2	0	0	1	1	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0012	1607	2	2	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0013	1595	1	1	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0014	1607	1	1	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0015	1608	1	0	0	1	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0016	1607	1	1	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0017	1608	1	0	0	1	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0018	1607	1	1	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	t0019	1607	1	1	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJC1_chr17_44793448_44835287	0/0	t0001	6502	91	23	18	38	4	8	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	1/0	t0002	6502	54	6	8	29	1	9	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0003	6503	39	3	6	17	2	11	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0004	6502	27	0	1	26	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/1	t0005	6502	26	6	13	3	1	2	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0006	6504	13	4	3	4	1	1	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0007	6504	11	5	2	3	0	1	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0008	6503	10	8	2	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0009	6504	9	9	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0010	6502	7	2	2	0	0	3	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0011	6503	7	0	0	7	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0012	6501	6	3	1	1	1	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0013	6503	6	1	2	3	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0014	6504	5	1	1	3	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0015	6503	4	0	0	4	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0016	6502	3	3	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0017	6502	3	0	0	3	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0018	6502	3	0	3	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0019	6501	3	0	1	2	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0020	6503	2	2	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0021	6502	2	2	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0022	6502	2	2	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0023	6503	2	2	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0024	6502	2	0	1	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0025	6503	2	0	0	2	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0026	6503	2	0	0	2	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0027	6504	1	0	1	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0028	6503	1	1	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0029	6501	1	1	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0030	6503	1	0	0	0	0	1	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0031	6502	1	0	0	0	0	1	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0032	6502	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0033	6502	1	0	1	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0034	6501	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0035	6502	1	0	0	0	0	1	copy fasta	GJC1	chr17	44793448	44835287