JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GJC1_chr17_44793448_44835287	0/0	t0036	6502	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0037	6502	1	1	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0038	6502	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0039	6502	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0040	6502	1	1	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0041	6503	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0042	6503	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0043	6502	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0044	6504	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0045	6504	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0046	6502	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0047	6503	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0048	6505	1	0	0	0	0	1	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0049	6504	1	0	0	0	0	1	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0050	6503	1	1	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0051	6502	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0052	6502	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0053	6503	1	1	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0054	6503	1	1	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0055	6502	1	1	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0056	6502	1	1	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0057	6504	1	1	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0058	6502	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0059	6502	1	1	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0060	6502	1	0	1	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0061	6503	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0062	6503	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0063	6503	1	1	0	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0064	6504	1	0	1	0	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC1_chr17_44793448_44835287	0/0	t0065	6536	1	0	0	1	0	0	copy fasta	GJC1	chr17	44793448	44835287
GJC2_chr1_228144930_228164826	0/1	t0001	846	280	37	59	131	12	40	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	1/0	t0002	846	108	44	9	51	0	3	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	t0003	846	12	11	1	0	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	t0004	846	5	0	2	0	3	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	t0005	846	3	3	0	0	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	t0006	846	2	0	1	0	0	1	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	t0007	846	2	0	2	0	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	t0008	846	1	0	0	0	1	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	t0009	846	1	1	0	0	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC3_chr7_99918266_99934620	1/1	t0001	280	390	94	69	161	18	46	copy fasta	GJC3	chr7	99918266	99934620
GJC3_chr7_99918266_99934620	0/0	t0002	280	2	0	1	1	0	0	copy fasta	GJC3	chr7	99918266	99934620
GJD2_chr15_34746032_34759998	0/0	t0001	1957	70	2	16	46	2	4	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0002	1956	64	2	9	40	3	10	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0003	1972	32	1	4	21	1	5	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0004	1970	30	4	7	15	3	1	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0005	1971	29	7	6	9	3	4	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0006	1973	25	6	2	14	0	3	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0007	1959	19	0	3	13	0	3	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0008	1955	19	8	2	7	1	1	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0009	1954	18	1	4	11	1	1	copy fasta	GJD2	chr15	34746032	34759998