JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GJD2_chr15_34746032_34759998	0/0	t0010	1953	11	1	4	1	1	4	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0011	1952	8	0	4	3	0	1	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0012	1974	8	2	1	5	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/1	t0013	1954	7	1	5	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0014	1956	7	6	1	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0015	1960	6	0	0	5	0	1	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0016	1969	6	2	0	4	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0017	1953	6	2	0	3	0	1	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0018	1956	4	4	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	1/0	t0019	1957	4	2	1	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0020	1957	4	4	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0021	1959	4	3	1	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0022	1960	4	2	1	0	0	1	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0023	1964	4	4	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0024	1967	4	4	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0025	1952	4	4	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0026	1961	3	2	0	0	0	1	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0027	1968	3	2	1	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0028	1954	3	1	0	1	1	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0029	1957	3	3	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0030	1964	2	2	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0031	1976	2	2	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0032	1961	2	2	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0033	1979	2	0	0	0	2	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0034	1975	2	1	0	1	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0035	1956	2	0	0	2	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0036	1957	2	2	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0037	1958	2	0	0	2	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0038	1957	2	0	2	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0039	1966	1	1	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0040	1975	1	1	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0041	1953	1	0	0	0	0	1	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0042	1956	1	1	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0043	1956	1	1	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0044	1957	1	0	0	1	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0045	1957	1	1	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0046	1964	1	1	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0047	1958	1	1	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0048	1970	1	0	0	1	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0049	1972	1	0	0	1	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0050	1976	1	0	0	1	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0051	1977	1	0	0	1	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0052	1953	1	1	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0053	1975	1	0	0	1	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0054	1964	1	1	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0055	1972	1	0	1	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0056	1957	1	0	1	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	t0057	1957	1	0	0	1	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD3_chr17_40355652_40369737	1/1	t0001	3202	280	32	71	124	14	37	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0002	3202	18	17	1	0	0	0	copy fasta	GJD3	chr17	40355652	40369737