JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GJD3_chr17_40355652_40369737	0/0	t0003	3202	14	0	1	6	3	4	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0004	3202	13	12	1	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0005	3202	7	7	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0006	3202	7	5	1	0	0	1	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0007	3202	6	0	0	6	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0008	3202	3	0	0	3	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0009	3202	3	3	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0010	3202	3	0	0	3	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0011	3202	2	0	1	0	1	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0012	3202	2	2	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0013	3202	1	1	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0014	3202	1	0	1	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0015	3202	1	1	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0016	3202	1	1	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0017	3202	1	1	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0018	3202	1	0	0	1	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0019	3202	1	0	1	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0020	3202	1	0	0	1	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0021	3202	1	0	0	1	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0022	3202	1	1	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0023	3202	1	1	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	t0024	3202	1	0	0	1	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD4_chr10_35600341_35613935	1/1	t0001	537	421	84	74	197	18	46	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	t0002	537	6	5	1	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	t0003	537	5	0	0	5	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	t0004	537	2	2	0	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	t0005	537	2	2	0	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	t0006	537	1	0	0	1	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	t0007	537	1	1	0	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	t0008	537	1	0	1	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	t0009	537	1	0	0	1	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJE1_chr6_142127925_142140358	1/0	t0001	671	378	79	75	167	16	40	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	t0002	671	8	8	0	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	t0003	670	5	0	0	5	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	t0004	671	4	4	0	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	t0005	671	2	0	0	2	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	t0006	671	1	0	1	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	t0007	671	1	0	0	1	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	t0008	671	1	1	0	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	t0009	671	1	0	0	1	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	t0010	671	1	1	0	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	t0011	671	1	1	0	0	0	0	copy fasta	GJE1	chr6	142127925	142140358
GK2_chr4_79401361_79413228	1/1	t0001	207	399	95	69	177	16	40	copy fasta	GK2	chr4	79401361	79413228
GK2_chr4_79401361_79413228	0/0	t0002	207	1	1	0	0	0	0	copy fasta	GK2	chr4	79401361	79413228
GK2_chr4_79401361_79413228	0/0	t0003	207	1	0	0	1	0	0	copy fasta	GK2	chr4	79401361	79413228
GK2_chr4_79401361_79413228	0/0	t0004	207	1	0	1	0	0	0	copy fasta	GK2	chr4	79401361	79413228
GK3_chr4_165272807_165284704	1/1	t0001	237	380	95	68	166	12	37	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	t0002	237	2	2	0	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	t0003	237	1	1	0	0	0	0	copy fasta	GK3	chr4	165272807	165284704
GK3_chr4_165272807_165284704	0/0	t0004	237	1	0	0	0	0	1	copy fasta	GK3	chr4	165272807	165284704