JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GK5_chr3_142152527_142230585	1/0	t0001	8226	81	13	20	37	1	9	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/1	t0002	8222	20	3	4	5	1	6	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0003	8227	16	9	5	0	1	1	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0004	8213	12	0	4	3	4	1	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0005	8237	12	0	2	7	1	2	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0006	8243	6	6	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0007	8227	6	0	5	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0008	8240	6	5	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0009	8226	5	5	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0010	8222	4	0	4	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0011	8219	4	4	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0012	8227	4	1	0	1	0	2	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0013	8227	4	4	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0014	8238	3	0	0	0	1	2	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0015	8221	3	3	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0016	8227	3	0	0	0	2	1	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0017	8227	3	0	0	2	0	1	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0018	8238	3	0	1	1	0	1	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0019	8236	2	2	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0020	8242	2	2	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0021	8248	2	1	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0022	8247	2	2	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0023	8247	2	1	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0024	8227	2	2	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0025	8235	2	2	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0026	8222	2	0	0	0	2	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0027	8226	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0028	8227	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0029	8221	1	0	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0030	8223	1	0	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0031	8239	1	0	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0032	8238	1	0	0	0	0	1	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0033	8250	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0034	8248	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0035	8258	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0036	8252	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0037	8237	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0038	8244	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0039	8245	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0040	8244	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0041	8244	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0042	8241	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0043	8241	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0044	8247	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0045	8246	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0046	8237	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0047	8226	1	0	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0048	8227	1	0	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0049	8227	1	0	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0050	8218	1	0	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585