JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GK5_chr3_142152527_142230585	0/0	t0051	8227	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0052	8228	1	0	0	0	0	1	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0053	8228	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0054	8226	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0055	8227	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0056	8222	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0057	8226	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0058	8224	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0059	8226	1	0	0	0	0	1	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0060	8222	1	0	0	0	0	1	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0061	8223	1	0	0	0	0	1	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0062	8222	1	0	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0063	8224	1	0	0	0	0	1	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0064	8225	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0065	8226	1	0	0	0	1	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0066	8226	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0067	8226	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0068	8227	1	0	0	0	0	1	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0069	8222	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0070	8223	1	0	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0071	8226	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0072	8226	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0073	8214	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0074	8226	1	0	0	0	0	1	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0075	8238	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0076	8222	1	0	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0077	8223	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0078	8244	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0079	8240	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0080	8239	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0081	8239	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0082	8236	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0083	8238	1	0	0	1	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0084	8243	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0085	8235	1	1	0	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0086	8226	1	0	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GK5_chr3_142152527_142230585	0/0	t0087	8238	1	0	1	0	0	0	copy fasta	GK5	chr3	142152527	142230585
GKAP1_chr9_83734425_83822769	0/0	t0001	701	146	38	23	56	8	21	copy fasta	GKAP1	chr9	83734425	83822769
GKAP1_chr9_83734425_83822769	0/1	t0002	701	118	23	15	63	5	11	copy fasta	GKAP1	chr9	83734425	83822769
GKAP1_chr9_83734425_83822769	0/0	t0003	701	56	10	11	23	3	9	copy fasta	GKAP1	chr9	83734425	83822769
GKAP1_chr9_83734425_83822769	0/0	t0004	701	6	6	0	0	0	0	copy fasta	GKAP1	chr9	83734425	83822769
GKAP1_chr9_83734425_83822769	0/0	t0005	701	3	3	0	0	0	0	copy fasta	GKAP1	chr9	83734425	83822769
GKAP1_chr9_83734425_83822769	0/0	t0006	701	3	0	0	3	0	0	copy fasta	GKAP1	chr9	83734425	83822769
GKAP1_chr9_83734425_83822769	0/0	t0007	701	1	0	0	1	0	0	copy fasta	GKAP1	chr9	83734425	83822769
GKAP1_chr9_83734425_83822769	1/0	t0008	701	1	0	0	0	0	0	copy fasta	GKAP1	chr9	83734425	83822769
GKAP1_chr9_83734425_83822769	0/0	t0009	701	1	0	1	0	0	0	copy fasta	GKAP1	chr9	83734425	83822769
GKAP1_chr9_83734425_83822769	0/0	t0010	701	1	0	0	0	0	1	copy fasta	GKAP1	chr9	83734425	83822769
GKN1_chr2_68969636_68985976	1/1	t0001	196	389	61	71	204	15	36	copy fasta	GKN1	chr2	68969636	68985976
GKN1_chr2_68969636_68985976	0/0	t0002	196	44	33	7	0	1	3	copy fasta	GKN1	chr2	68969636	68985976
GKN1_chr2_68969636_68985976	0/0	t0003	196	30	5	0	22	0	3	copy fasta	GKN1	chr2	68969636	68985976