JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GKN1_chr2_68969636_68985976	0/0	t0004	196	1	1	0	0	0	0	copy fasta	GKN1	chr2	68969636	68985976
GKN2_chr2_68940232_68957893	1/1	t0001	169	466	100	68	232	16	48	copy fasta	GKN2	chr2	68940232	68957893
GK_chrX_30648423_30736462	0/1	t0001	2835	91	11	16	47	2	14	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0002	2836	85	14	19	37	6	9	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	1/0	t0003	2836	68	16	16	29	3	3	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0004	2836	10	10	0	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0005	2835	6	6	0	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0006	2836	3	0	3	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0007	2835	2	2	0	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0008	2835	2	2	0	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0009	2835	2	0	0	2	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0010	2835	2	2	0	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0011	2837	2	2	0	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0012	2836	2	2	0	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0013	2835	1	1	0	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0014	2836	1	1	0	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0015	2836	1	1	0	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0016	2836	1	0	0	0	0	1	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0017	2836	1	1	0	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0018	2836	1	0	0	1	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0019	2835	1	0	0	1	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0020	2836	1	0	1	0	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0021	2836	1	0	0	1	0	0	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0022	2835	1	0	0	0	0	1	copy fasta	GK	chrX	30648423	30736462
GK_chrX_30648423_30736462	0/0	t0023	2836	1	1	0	0	0	0	copy fasta	GK	chrX	30648423	30736462
GLA_chrX_101392803_101412925	1/1	t0001	29	247	59	41	118	11	16	copy fasta	GLA	chrX	101392803	101412925
GLA_chrX_101392803_101412925	0/0	t0002	29	41	13	7	15	0	6	copy fasta	GLA	chrX	101392803	101412925
GLA_chrX_101392803_101412925	0/0	t0003	29	29	6	3	11	0	9	copy fasta	GLA	chrX	101392803	101412925
GLA_chrX_101392803_101412925	0/0	t0004	29	1	0	0	0	0	1	copy fasta	GLA	chrX	101392803	101412925
GLB1L2_chr11_134326988_134381324	0/0	t0001	1131	127	4	31	76	4	12	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0002	1201	100	5	6	69	6	14	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	1/1	t0003	1341	54	34	11	5	0	2	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0004	1271	43	22	12	0	4	5	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0005	1411	23	2	6	4	3	8	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0006	1271	16	3	3	8	1	1	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0007	1195	10	9	1	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0008	1341	8	7	1	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0009	1341	8	7	1	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0010	1131	7	0	1	6	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0011	1201	6	0	0	6	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0012	1271	2	0	0	0	0	2	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0013	1341	1	0	0	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0014	1341	1	1	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0015	1341	1	1	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0016	1201	1	0	0	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0017	1201	1	0	0	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0018	1132	1	0	0	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0019	1341	1	0	1	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0020	1271	1	1	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	t0021	1131	1	1	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324