JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLB1L2_chr11_134326988_134381324	0/0	t0022	1271	1	1	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L3_chr11_134271379_134324564	0/1	t0001	986	253	53	35	127	10	27	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	t0002	986	120	29	27	42	8	14	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	t0003	987	14	2	3	8	0	1	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	t0004	987	12	2	8	2	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	t0005	986	4	4	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	1/0	t0006	985	4	0	0	3	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	t0007	986	4	4	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	t0008	986	2	2	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	t0009	986	2	0	0	2	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	t0010	986	1	0	1	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	t0011	986	1	0	1	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	t0012	986	1	0	1	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	t0013	986	1	1	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	t0014	986	1	0	0	1	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	t0015	987	1	1	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	t0016	987	1	0	0	1	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L_chr2_219231598_219250444	0/1	t0001	762	283	34	66	129	16	37	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	t0002	762	35	14	10	6	0	5	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	t0003	764	35	16	0	18	0	1	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	1/0	t0004	761	21	12	3	4	1	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	t0005	763	14	3	4	5	0	2	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	t0006	764	6	4	1	1	0	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	t0007	763	3	2	0	1	0	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	t0008	763	3	1	0	2	0	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	t0009	762	3	3	0	0	0	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	t0010	762	1	0	0	0	0	1	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	t0011	762	1	0	0	0	0	1	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	t0012	762	1	0	0	1	0	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	t0013	763	1	1	0	0	0	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	t0014	762	1	0	0	0	1	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	t0015	761	1	0	0	0	0	1	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	t0016	761	1	0	0	1	0	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1_chr3_32991617_33102146	1/0	t0001	490	319	83	49	140	13	33	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/1	t0002	490	63	4	16	31	1	10	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	t0003	490	4	1	3	0	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	t0004	490	4	4	0	0	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	t0005	490	2	2	0	0	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	t0006	490	1	0	0	0	0	1	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	t0007	490	1	0	0	1	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLCCI1_chr7_7963796_8094080	0/0	t0001	3090	78	22	15	31	2	8	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	1/0	t0002	3098	41	8	10	14	2	6	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0003	3103	41	2	13	19	1	6	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0004	3098	32	0	6	23	0	3	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0005	3100	15	2	0	10	1	2	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0006	3099	14	1	0	12	0	1	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0007	3102	13	0	0	11	0	2	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0008	3091	11	3	0	2	1	5	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0009	3103	9	3	1	4	0	1	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0010	3092	8	0	6	0	1	1	copy fasta	GLCCI1	chr7	7963796	8094080