JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLCCI1_chr7_7963796_8094080	0/0	t0061	3102	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0062	3091	1	0	0	1	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0063	3093	1	0	0	0	0	1	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0064	3095	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0065	3095	1	0	1	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0066	3090	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0067	3098	1	0	0	1	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0068	3104	1	0	0	1	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0069	3100	1	0	0	1	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0070	3099	1	0	0	1	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0071	3101	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0072	3098	1	0	0	1	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0073	3098	1	0	0	1	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0074	3102	1	0	0	0	0	1	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0075	3092	1	0	1	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0076	3091	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0077	3097	1	0	0	1	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0078	3099	1	0	0	1	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0079	3105	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0080	3097	1	0	1	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0081	3109	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0082	3102	1	0	0	1	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0083	3102	1	0	0	1	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0084	3103	1	0	0	1	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0085	3105	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0086	3090	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0087	3100	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0088	3104	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0089	3090	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	t0090	3102	1	0	0	0	0	1	copy fasta	GLCCI1	chr7	7963796	8094080
GLCE_chr15_69155635_69277207	0/1	t0001	3190	120	8	16	75	4	16	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	1/0	t0002	3191	101	28	15	48	4	5	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0003	3190	68	15	7	38	1	7	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0004	3191	11	11	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0005	3191	6	6	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0006	3191	5	5	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0007	3191	4	4	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0008	3190	3	0	0	3	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0009	3191	2	2	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0010	3191	2	2	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0011	3191	2	0	1	0	0	1	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0012	3190	2	2	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0013	3191	2	2	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0014	3191	2	2	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0015	3190	1	0	0	1	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0016	3191	1	1	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0017	3191	1	0	0	0	0	1	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0018	3191	1	1	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0019	3191	1	0	0	0	1	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0020	3191	1	1	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207