JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLCE_chr15_69155635_69277207	0/0	t0021	3191	1	0	1	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0022	3190	1	1	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0023	3190	1	0	0	1	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0024	3190	1	0	0	1	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0025	3191	1	0	0	1	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	t0026	3191	1	1	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLDC_chr9_6527467_6650729	0/1	t0001	781	166	43	25	83	2	12	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0002	779	71	2	15	52	1	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	1/0	t0003	781	37	1	15	2	8	10	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0004	780	16	3	2	5	2	4	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0005	781	7	7	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0006	781	6	3	1	1	0	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0007	781	5	3	2	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0008	782	4	4	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0009	780	4	4	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0010	780	4	4	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0011	781	2	0	0	0	1	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0012	781	2	2	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0013	781	2	2	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0014	780	2	2	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0015	780	2	2	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0016	781	1	0	0	0	0	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0017	781	1	0	1	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0018	780	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0019	781	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0020	781	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0021	781	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0022	781	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0023	782	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0024	781	1	0	0	1	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0025	781	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0026	780	1	0	1	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	t0027	781	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDN_chr15_51336655_51413000	1/1	t0001	3277	124	13	30	60	3	16	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0002	3275	62	3	9	39	5	6	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0003	3276	36	14	11	8	1	2	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0004	3276	36	20	2	13	0	1	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0005	3277	34	9	12	0	4	9	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0006	3279	29	0	1	26	1	1	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0007	3278	24	5	5	11	0	3	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0008	3277	9	0	0	9	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0009	3280	7	0	0	7	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0010	3278	7	7	0	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0011	3276	6	0	1	5	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0012	3276	6	6	0	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0013	3278	5	4	1	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0014	3277	3	1	0	2	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0015	3278	3	3	0	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0016	3277	2	2	0	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0017	3279	2	0	0	2	0	0	copy fasta	GLDN	chr15	51336655	51413000