JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLDN_chr15_51336655_51413000	0/0	t0018	3277	2	2	0	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0019	3277	2	0	2	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0020	3277	1	0	0	1	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0021	3277	1	0	0	1	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0022	3276	1	0	0	1	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0023	3276	1	0	0	0	0	1	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0024	3275	1	0	0	0	0	1	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0025	3275	1	0	0	1	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0026	3277	1	0	0	1	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0027	3277	1	1	0	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0028	3278	1	0	0	0	0	1	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0029	3276	1	0	0	0	0	1	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0030	3279	1	1	0	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0031	3278	1	1	0	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	t0032	3277	1	0	0	1	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLE1_chr9_128499719_128547288	1/1	t0001	1206	207	66	39	75	4	21	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	t0002	1206	117	15	15	69	4	14	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	t0003	1206	28	0	3	24	0	1	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	t0004	1206	4	0	3	0	1	0	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	t0005	1206	1	1	0	0	0	0	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	t0006	1206	1	0	0	1	0	0	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	t0007	1206	1	0	0	1	0	0	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	t0008	1206	1	0	0	0	1	0	copy fasta	GLE1	chr9	128499719	128547288
GLG1_chr16_74442440_74612114	0/0	t0001	5749	81	17	14	39	6	5	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0002	5749	65	11	8	28	1	17	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/1	t0003	5749	38	9	11	13	1	3	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0004	5749	27	1	8	18	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0005	5750	24	3	2	18	0	1	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0006	5750	22	0	11	7	0	4	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0007	5750	5	2	0	2	0	1	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	1/0	t0008	5748	5	3	1	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0009	5749	5	0	2	0	1	2	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0010	5750	5	1	0	1	0	3	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0011	5749	4	4	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0012	5751	3	0	0	3	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0013	5751	3	0	2	1	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0014	5749	3	0	1	0	2	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0015	5748	2	0	0	1	1	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0016	5749	2	0	2	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0017	5750	2	2	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0018	5749	2	2	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0019	5750	2	0	2	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0020	5749	2	2	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0021	5749	2	2	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0022	5750	2	2	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0023	5749	2	2	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0024	5749	2	0	0	2	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0025	5749	1	0	0	0	0	1	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0026	5749	1	0	0	1	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0027	5750	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114