JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLG1_chr16_74442440_74612114	0/0	t0028	5751	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0029	5749	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0030	5750	1	0	0	1	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0031	5749	1	0	0	1	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0032	5749	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0033	5749	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0034	5750	1	0	0	1	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0035	5749	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0036	5749	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0037	5749	1	0	0	1	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0038	5748	1	0	0	0	0	1	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0039	5750	1	0	1	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0040	5749	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0041	5749	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0042	5750	1	0	1	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0043	5749	1	0	0	1	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0044	5750	1	0	1	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0045	5750	1	0	0	0	0	1	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0046	5749	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0047	5748	1	0	0	1	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0048	5749	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0049	5749	1	0	1	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0050	5749	1	0	0	0	0	1	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0051	5749	1	0	0	1	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0052	5749	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0053	5751	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0054	5749	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0055	5749	1	1	0	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	t0056	5750	1	0	0	1	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLI1_chr12_57454785_57477268	0/1	t0001	652	370	89	68	168	10	34	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	t0002	652	19	0	0	18	0	1	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	1/0	t0003	652	7	5	1	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	t0004	652	2	0	2	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	t0005	652	2	2	0	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	t0006	652	2	2	0	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	t0007	652	2	0	0	2	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	t0008	652	2	0	0	0	0	2	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	t0009	652	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	t0010	652	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	t0011	652	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	t0012	652	1	1	0	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	t0013	652	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	t0014	652	1	1	0	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	t0015	652	1	0	0	0	0	1	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	t0016	652	1	0	1	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI2_chr2_120730868_120997653	0/0	t0001	2427	24	6	3	10	0	5	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0002	2433	14	3	3	2	1	5	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0003	2431	12	4	2	4	2	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0004	2429	12	2	5	4	0	1	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0005	2429	11	4	4	1	0	2	copy fasta	GLI2	chr2	120730868	120997653