JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLI2_chr2_120730868_120997653	0/0	t0006	2425	9	7	1	1	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0007	2421	8	8	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0008	2423	6	4	0	2	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0009	2427	5	5	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0010	2433	5	4	0	0	1	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0011	2431	5	3	0	0	2	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0012	2431	3	1	1	1	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0013	2427	2	2	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0014	2435	2	0	1	1	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0015	2432	2	0	1	1	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0016	2425	2	1	0	1	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0017	2427	2	2	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0018	2431	2	0	1	0	1	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0019	2431	2	0	2	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0020	2417	2	1	1	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0021	2409	2	2	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0022	2427	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0023	2433	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0024	2423	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0025	2421	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0026	2427	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0027	2423	1	0	0	0	0	1	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0028	2427	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0029	2437	1	0	1	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0030	2395	1	0	0	0	0	1	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0031	2423	1	0	0	0	0	1	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0032	2425	1	0	0	0	0	1	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0033	2415	1	0	0	1	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0034	2435	1	0	0	0	1	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0035	2427	1	0	0	1	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0036	2423	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0037	2421	1	0	1	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0038	2431	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0039	2427	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0040	2431	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0041	2423	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0042	2421	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0043	2421	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0044	2437	1	0	1	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0045	2431	1	0	1	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0046	2429	1	0	0	0	0	1	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0047	2427	1	0	0	0	0	1	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0048	2431	1	0	0	0	0	1	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	t0049	2427	1	0	1	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI3_chr7_41955949_42242209	1/0	t0001	3663	32	21	2	4	1	3	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0002	3664	18	6	3	6	1	2	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0003	3664	13	0	5	7	0	1	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0004	3665	7	0	0	0	0	7	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0005	3663	7	0	3	1	2	1	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0006	3664	7	6	1	0	0	0	copy fasta	GLI3	chr7	41955949	42242209