JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLI3_chr7_41955949_42242209	0/0	t0007	3664	5	4	1	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0008	3662	5	4	0	0	1	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0009	3664	4	0	2	2	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0010	3664	4	0	0	2	1	1	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0011	3663	4	4	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0012	3663	4	4	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0013	3660	3	3	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0014	3663	3	3	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0015	3663	2	2	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0016	3663	2	0	2	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/1	t0017	3663	2	0	1	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0018	3663	2	1	0	1	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0019	3663	2	2	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0020	3663	2	2	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0021	3664	2	0	2	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0022	3663	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0023	3663	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0024	3662	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0025	3663	1	0	1	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0026	3664	1	0	0	1	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0027	3664	1	0	1	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0028	3664	1	0	0	1	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0029	3664	1	0	0	0	1	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0030	3664	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0031	3664	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0032	3664	1	0	1	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0033	3663	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0034	3662	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0035	3663	1	0	1	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0036	3663	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0037	3663	1	0	0	1	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0038	3664	1	0	0	0	0	1	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0039	3663	1	0	0	1	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0040	3663	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0041	3662	1	0	0	0	1	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0042	3663	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0043	3664	1	0	0	1	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0044	3662	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0045	3663	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0046	3663	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0047	3663	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0048	3662	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	t0049	3662	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI4_chr8_143262445_143281931	1/1	t0001	205	348	72	74	146	14	40	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	t0002	205	20	20	0	0	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	t0003	205	14	0	2	12	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	t0004	205	6	6	0	0	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	t0005	205	3	0	0	3	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	t0006	205	2	0	0	0	0	2	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	t0007	205	1	0	0	1	0	0	copy fasta	GLI4	chr8	143262445	143281931