JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLIPR1L1_chr12_75329670_75375560	1/1	t0001	444	348	84	59	147	14	42	copy fasta	GLIPR1L1	chr12	75329670	75375560
GLIPR1L1_chr12_75329670_75375560	0/0	t0002	444	19	1	2	16	0	0	copy fasta	GLIPR1L1	chr12	75329670	75375560
GLIPR1L1_chr12_75329670_75375560	0/0	t0003	444	2	1	1	0	0	0	copy fasta	GLIPR1L1	chr12	75329670	75375560
GLIPR1L1_chr12_75329670_75375560	0/0	t0004	444	1	0	0	1	0	0	copy fasta	GLIPR1L1	chr12	75329670	75375560
GLIPR1L2_chr12_75386089_75437688	1/0	t0001	1556	145	28	24	71	6	15	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/1	t0002	1554	112	19	21	56	4	11	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	t0003	1556	77	21	14	27	2	13	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	t0004	1556	18	17	1	0	0	0	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	t0005	1555	2	0	0	0	0	2	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	t0006	1556	1	1	0	0	0	0	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	t0007	1555	1	0	0	1	0	0	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	t0008	1556	1	0	0	0	0	1	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	t0009	1556	1	0	0	1	0	0	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	t0010	1555	1	0	0	1	0	0	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	t0011	1554	1	0	0	1	0	0	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1_chr12_75475755_75508863	0/1	t0001	5008	85	4	14	54	4	8	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0002	5008	75	20	15	31	4	5	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0003	5009	71	16	14	25	4	12	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0004	5012	31	1	2	28	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	1/0	t0005	5012	19	4	9	0	3	2	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0006	5009	13	0	3	10	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0007	5012	11	10	1	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0008	5012	11	9	1	1	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0009	5012	9	9	0	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0010	5009	3	3	0	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0011	5012	2	1	1	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0012	5008	2	0	0	0	0	2	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0013	5012	2	2	0	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0014	5012	2	0	0	0	0	2	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0015	5012	2	2	0	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0016	5012	2	2	0	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0017	5009	2	2	0	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0018	4994	2	0	0	2	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0019	5012	2	0	0	2	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0020	5012	1	0	0	1	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0021	5013	1	1	0	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0022	5013	1	0	0	1	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0023	5008	1	0	0	0	0	1	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0024	5008	1	0	1	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0025	5008	1	0	1	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0026	5008	1	0	0	1	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0027	5012	1	1	0	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0028	5012	1	1	0	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0029	5008	1	0	0	0	1	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0030	5008	1	0	0	1	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0031	5012	1	1	0	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0032	5012	1	1	0	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0033	5012	1	0	0	0	0	1	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0034	5009	1	0	0	0	0	1	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	t0035	5012	1	0	0	1	0	0	copy fasta	GLIPR1	chr12	75475755	75508863