JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLIPR2_chr9_36131733_36168906	1/1	t0001	1431	246	38	55	117	12	22	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0002	1431	110	9	15	65	2	19	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0003	1431	13	12	1	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0004	1431	10	3	3	0	1	3	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0005	1431	7	6	1	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0006	1430	7	7	0	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0007	1430	4	0	2	0	0	2	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0008	1431	3	3	0	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0009	1431	3	0	0	3	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0010	1431	3	2	1	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0011	1431	2	2	0	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0012	1431	1	1	0	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0013	1431	1	1	0	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0014	1431	1	0	1	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0015	1431	1	0	0	1	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0016	1431	1	0	1	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0017	1431	1	0	0	0	1	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0018	1431	1	1	0	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0019	1431	1	1	0	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0020	1431	1	1	0	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0021	1431	1	0	0	1	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0022	1431	1	1	0	0	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIPR2_chr9_36131733_36168906	0/0	t0023	1431	1	0	0	1	0	0	copy fasta	GLIPR2	chr9	36131733	36168906
GLIS1_chr1_53501239_53744164	1/1	t0001	483	75	3	22	34	6	8	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0002	483	61	11	5	36	2	7	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0003	483	20	16	3	0	1	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0004	483	18	12	2	2	1	1	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0005	483	18	11	1	2	0	4	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0006	483	9	5	0	4	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0007	483	8	6	0	2	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0008	483	6	3	0	1	0	2	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0009	483	5	5	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0010	483	4	4	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0011	483	3	3	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0012	483	2	2	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0013	483	2	0	1	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0014	483	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0015	483	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0016	483	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0017	483	1	0	0	1	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS1_chr1_53501239_53744164	0/0	t0018	483	1	1	0	0	0	0	copy fasta	GLIS1	chr1	53501239	53744164
GLIS2_chr16_4311067_4344595	0/1	t0001	2325	249	50	44	125	9	20	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0002	2325	43	4	11	16	0	12	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0003	2325	38	0	8	14	3	13	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0004	2325	10	10	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0005	2325	6	6	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0006	2325	6	3	1	0	2	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0007	2325	5	5	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0008	2325	3	0	1	1	0	1	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0009	2325	3	3	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595