JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLIS2_chr16_4311067_4344595	0/0	t0010	2322	3	3	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0011	2330	3	0	1	0	2	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0012	2325	3	1	2	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0013	2325	3	3	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0014	2330	2	0	2	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0015	2325	2	0	2	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0016	2325	2	1	1	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0017	2325	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0018	2325	1	0	0	1	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0019	2325	1	0	0	1	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0020	2325	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0021	2325	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0022	2325	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0023	2325	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0024	2325	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0025	2325	1	0	0	1	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0026	2325	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0027	2325	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0028	2325	1	0	1	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0029	2325	1	1	0	0	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS2_chr16_4311067_4344595	0/0	t0030	2325	1	0	0	1	0	0	copy fasta	GLIS2	chr16	4311067	4344595
GLIS3_chr9_3819127_4305068	0/0	t0001	4891	16	1	7	8	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0002	4894	13	0	3	9	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0003	4893	11	0	3	7	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0004	4894	10	8	2	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0005	4891	10	0	2	5	0	3	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0006	4891	7	7	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0007	4892	6	6	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0008	4893	4	0	2	0	0	2	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0009	4894	3	2	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0010	4893	3	1	0	1	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0011	4893	3	2	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0012	4893	3	3	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0013	4892	3	3	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0014	4893	3	0	1	0	1	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0015	4892	3	3	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0016	4891	3	1	1	0	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0017	4893	2	0	0	2	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0018	4894	2	2	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0019	4891	2	2	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0020	4893	2	2	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0021	4892	2	0	2	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0022	4894	2	2	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0023	4890	2	2	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0024	4891	2	1	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0025	4892	2	0	0	2	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0026	4892	2	0	0	2	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0027	4893	2	0	1	0	1	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0028	4891	2	0	0	2	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0029	4891	2	0	0	1	1	0	copy fasta	GLIS3	chr9	3819127	4305068