JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLIS3_chr9_3819127_4305068	0/0	t0030	4892	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0031	4891	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0032	4892	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0033	4893	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0034	4894	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0035	4894	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0036	4892	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0037	4894	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0038	4894	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0039	4892	1	0	0	0	1	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0040	4892	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0041	4895	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0042	4892	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0043	4894	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0044	4894	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0045	4891	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0046	4892	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0047	4894	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0048	4891	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0049	4893	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0050	4892	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0051	4893	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0052	4894	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0053	4893	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0054	4891	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0055	4892	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0056	4891	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0057	4891	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0058	4891	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0059	4891	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0060	4892	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0061	4890	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0062	4893	1	0	0	0	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0063	4892	1	0	0	0	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0064	4894	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0065	4893	1	0	0	0	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0066	4893	1	0	0	0	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0067	4892	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0068	4893	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0069	4891	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0070	4891	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0071	4891	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0072	4893	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0073	4892	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0074	4892	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0075	4891	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0076	4891	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0077	4891	1	0	0	0	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0078	4891	1	0	0	0	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0079	4892	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068