JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLIS3_chr9_3819127_4305068	0/0	t0080	4891	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0081	4893	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0082	4892	1	0	0	0	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0083	4893	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0084	4892	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0085	4894	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0086	4893	1	0	0	0	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0087	4893	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0088	4894	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0089	4891	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	t0090	4893	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLMN_chr1_92241402_92303987	1/1	t0001	222	100	50	25	11	4	8	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	t0002	222	99	29	25	21	6	18	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	t0003	222	1	1	0	0	0	0	copy fasta	GLMN	chr1	92241402	92303987
GLMP_chr1_156287688_156300679	1/1	t0001	391	294	73	46	140	10	23	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	t0002	391	93	7	23	44	6	13	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	t0003	391	7	6	1	0	0	0	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	t0004	391	2	0	2	0	0	0	copy fasta	GLMP	chr1	156287688	156300679
GLO1_chr6_38670925_38708145	0/1	t0001	1462	165	49	24	70	9	12	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	1/0	t0002	1462	156	20	40	65	6	24	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0003	1462	56	15	4	33	0	4	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0004	1462	9	0	5	0	0	4	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0005	1462	7	0	0	7	0	0	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0006	1462	4	4	0	0	0	0	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0007	1462	3	1	0	2	0	0	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0008	1462	1	1	0	0	0	0	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0009	1462	1	0	1	0	0	0	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0010	1462	1	1	0	0	0	0	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0011	1462	1	1	0	0	0	0	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0012	1462	1	0	1	0	0	0	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0013	1462	1	1	0	0	0	0	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0014	1462	1	0	0	1	0	0	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0015	1462	1	1	0	0	0	0	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0016	1462	1	0	0	0	1	0	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/0	t0017	1462	1	0	1	0	0	0	copy fasta	GLO1	chr6	38670925	38708145
GLOD4_chr17_754330_787280	1/1	t0001	869	397	88	71	173	18	45	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	t0002	869	11	0	2	8	0	1	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	t0003	869	5	0	0	5	0	0	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	t0004	869	2	2	0	0	0	0	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	t0005	869	2	2	0	0	0	0	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	t0006	869	1	0	1	0	0	0	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	t0007	869	1	0	0	1	0	0	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	t0008	869	1	0	0	1	0	0	copy fasta	GLOD4	chr17	754330	787280
GLOD5_chrX_48756747_48778648	1/1	t0001	258	179	28	37	88	8	16	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	t0002	258	89	47	11	24	1	6	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	t0003	258	1	1	0	0	0	0	copy fasta	GLOD5	chrX	48756747	48778648
GLP1R_chr6_39043781_39096303	0/0	t0001	5281	43	0	2	32	1	8	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0002	5287	40	1	11	21	3	4	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	1/0	t0003	5291	36	1	11	14	3	6	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0004	5291	32	4	5	19	0	4	copy fasta	GLP1R	chr6	39043781	39096303