JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLP1R_chr6_39043781_39096303	0/0	t0005	5289	18	0	0	17	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0006	5279	17	0	4	13	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0007	5285	13	3	5	4	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0008	5289	12	2	1	7	1	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0009	5285	9	0	3	2	0	4	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0010	5293	8	0	4	0	1	3	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0011	5297	7	5	0	1	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0012	5287	7	0	4	0	1	2	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0013	5283	7	0	0	6	1	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0014	5285	7	7	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0015	5285	7	0	0	7	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0016	5285	7	0	0	7	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0017	5295	5	4	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0018	5291	5	3	0	0	0	2	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0019	5289	5	5	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0020	5285	5	1	4	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0021	5285	5	0	0	4	1	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0022	5281	5	0	0	5	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0023	5303	4	4	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0024	5293	4	4	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0025	5281	4	0	0	4	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0026	5303	3	3	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/1	t0027	5295	3	1	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0028	5293	3	1	0	1	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0029	5291	3	0	1	2	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0030	5291	3	1	2	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0031	5287	3	0	0	3	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0032	5287	3	3	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0033	5305	2	2	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0034	5299	2	2	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0035	5297	2	2	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0036	5293	2	2	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0037	5295	2	0	2	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0038	5295	2	0	2	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0039	5291	2	0	1	0	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0040	5291	2	2	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0041	5289	2	0	0	2	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0042	5287	2	0	0	0	1	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0043	5287	2	0	0	2	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0044	5287	2	0	1	0	1	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0045	5281	2	0	0	2	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0046	5291	2	0	2	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0047	5291	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0048	5305	1	1	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0049	5307	1	1	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0050	5307	1	1	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0051	5307	1	1	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0052	5305	1	0	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0053	5305	1	1	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0054	5301	1	1	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303