JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLP1R_chr6_39043781_39096303	0/0	t0105	5285	1	0	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0106	5285	1	0	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0107	5285	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0108	5285	1	0	0	0	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0109	5285	1	1	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0110	5285	1	0	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0111	5285	1	0	0	0	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0112	5285	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0113	5281	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0114	5281	1	0	0	0	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0115	5281	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0116	5281	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0117	5281	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0118	5281	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0119	5281	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0120	5279	1	0	0	0	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0121	5277	1	0	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0122	5297	1	1	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	t0123	5289	1	1	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP2R_chr17_9820924_9897099	1/1	t0001	2535	287	80	52	112	9	32	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0002	2535	34	0	9	24	0	1	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0003	2534	21	1	13	0	3	4	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0004	2534	14	3	1	2	4	4	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0005	2535	7	7	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0006	2535	2	0	2	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0007	2535	2	2	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0008	2535	1	0	0	1	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0009	2535	1	1	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0010	2535	1	1	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0011	2535	1	0	0	1	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0012	2525	1	0	0	1	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0013	2535	1	1	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0014	2535	1	0	0	0	0	1	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0015	2535	1	0	0	1	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0016	2535	1	0	1	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0017	2534	1	0	1	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0018	2535	1	0	1	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0019	2535	1	1	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	t0020	2535	1	1	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLRA1_chr5_151817513_151929851	1/0	t0001	463	179	60	30	60	9	19	copy fasta	GLRA1	chr5	151817513	151929851
GLRA1_chr5_151817513_151929851	0/1	t0002	463	101	28	20	42	3	7	copy fasta	GLRA1	chr5	151817513	151929851
GLRA1_chr5_151817513_151929851	0/0	t0003	463	4	2	2	0	0	0	copy fasta	GLRA1	chr5	151817513	151929851
GLRA2_chrX_14524536_14736812	0/0	t0001	1838	39	2	6	23	3	5	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0002	1840	30	3	7	19	0	1	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/1	t0003	1830	22	1	6	8	3	3	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0004	1836	17	3	4	9	0	1	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0005	1838	13	4	4	0	3	2	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0006	1842	13	1	4	6	0	2	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0007	1840	12	4	7	1	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0008	1834	11	5	0	3	0	3	copy fasta	GLRA2	chrX	14524536	14736812