JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLRA2_chrX_14524536_14736812	0/0	t0009	1820	5	3	2	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0010	1822	5	4	0	0	0	1	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0011	1842	4	2	0	0	1	1	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0012	1854	4	3	1	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0013	1830	3	2	1	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0014	1836	3	3	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0015	1841	3	1	0	2	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0016	1844	3	0	0	3	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0017	1848	3	2	0	1	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0018	1818	2	2	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0019	1828	2	0	0	1	0	1	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0020	1832	2	0	1	0	1	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0021	1834	2	2	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0022	1842	2	0	0	2	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0023	1850	2	1	1	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0024	1822	2	2	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0025	1834	2	2	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0026	1840	2	1	1	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0027	1842	2	2	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0028	1838	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0029	1838	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0030	1834	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0031	1834	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0032	1836	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0033	1838	1	0	0	0	0	1	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0034	1840	1	0	0	1	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0035	1839	1	0	0	1	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0036	1844	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0037	1843	1	0	0	0	0	1	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0038	1847	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0039	1848	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	1/0	t0040	1850	1	0	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0041	1858	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0042	1840	1	0	1	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0043	1834	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0044	1848	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0045	1838	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0046	1832	1	0	1	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0047	1846	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0048	1846	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	t0049	1830	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA3_chr4_174631920_174834247	0/0	t0001	7300	49	3	12	23	3	8	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0002	7335	27	1	5	17	0	4	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0003	7302	23	1	5	11	2	4	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0004	7337	17	5	3	4	1	4	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0005	7301	6	0	0	6	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0006	7329	6	0	6	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0007	7327	6	5	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0008	7337	6	6	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0009	7337	6	1	2	3	0	0	copy fasta	GLRA3	chr4	174631920	174834247