JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
GLRA3_chr4_174631920_174834247	0/0	t0010	7305	5	5	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0011	7346	5	0	0	0	1	4	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0012	7335	5	4	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0013	7334	5	0	2	3	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0014	7335	5	0	3	2	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	1/0	t0015	7303	4	3	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0016	7341	4	4	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0017	7334	4	0	2	0	1	1	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0018	7337	4	0	0	4	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0019	7301	3	0	0	0	0	3	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0020	7343	3	0	2	0	0	1	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0021	7336	3	3	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0022	7335	3	3	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0023	7337	3	3	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0024	7338	2	0	0	2	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0025	7298	2	2	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0026	7300	2	1	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0027	7300	2	0	2	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0028	7344	2	0	2	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0029	7327	2	2	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0030	7346	2	2	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0031	7337	2	2	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0032	7343	2	2	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0033	7333	2	2	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0034	7345	2	1	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0035	7327	2	1	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0036	7341	2	0	0	2	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0037	7336	2	0	1	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0038	7334	2	0	2	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0039	7296	1	0	0	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0040	7326	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0041	7346	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0042	7299	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0043	7300	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0044	7338	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0045	7343	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0046	7339	1	0	0	0	0	1	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0047	7338	1	0	0	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0048	7304	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0049	7302	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0050	7290	1	0	0	0	1	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0051	7301	1	0	0	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0052	7302	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0053	7298	1	0	0	0	0	1	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0054	7296	1	0	0	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0055	7302	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0056	7300	1	0	0	1	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0057	7302	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0058	7307	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	t0059	7304	1	0	0	0	0	1	copy fasta	GLRA3	chr4	174631920	174834247